View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5679_high_1 (Length: 331)
Name: NF5679_high_1
Description: NF5679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5679_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 11045177 - 11045479
Alignment:
| Q |
19 |
aattctttaaatttaactttgtgtacatcactggggacttcaaaagattgtaaattactacaatatgatacatgcatttttagatggttgatatattatg |
118 |
Q |
| |
|
||||||| ||||| |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11045177 |
aattcttcaaattcaactttgtgtacattagtggggaattcaaaagattgtaaattactacaatatgatacatgcattttctgatggttgatatattatg |
11045276 |
T |
|
| Q |
119 |
ctaatataagttctaataaaaataaattgatggtgtttaaatttttctgtgtgacattgcaggatattgtcaaaagtatggttgaaaagattcttgaaga |
218 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11045277 |
ctaatataagttctaataagaacaaattgatggtgtttaaatttgtctttgtgacatttcaggataatgtcaaaagtatggttgaaaagattcttgaaga |
11045376 |
T |
|
| Q |
219 |
tagcttgaaacattacaagatttgtatagaactaatatcaatagtataagcttctaaattatctctggtcagactattaacttgaattttcttacgtttc |
318 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
11045377 |
tggcttgaaagattacaagatttgtatagaactaatatcaatagtacaagcttctaaattatctctggtcagactatttacttgaattttcttatgtttc |
11045476 |
T |
|
| Q |
319 |
atc |
321 |
Q |
| |
|
||| |
|
|
| T |
11045477 |
atc |
11045479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 296
Target Start/End: Original strand, 21573290 - 21573439
Alignment:
| Q |
147 |
gatggtgtttaaatttttctgtgtgacattgcaggatattgtcaaaagtatggttgaaaagattcttgaagatagcttgaaacattacaagatttgtata |
246 |
Q |
| |
|
|||||||||| || | ||| ||||||||||||||||| |||||| ||||||| || ||| |||||||| ||| |||| |||||||||| |||| | |
|
|
| T |
21573290 |
gatggtgttttaacatatctttgtgacattgcaggataatgtcaagagtatggctggaaaatttcttgaatatacgatgaacaattacaagatctgtaca |
21573389 |
T |
|
| Q |
247 |
gaactaatatcaatagtataagcttctaaattatctctggtcagactatt |
296 |
Q |
| |
|
|||| | |||||||| || | || | | ||||||||||||||||| |||| |
|
|
| T |
21573390 |
gaaccagtatcaatattacaggcctttcaattatctctggtcagaatatt |
21573439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University