View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5679_high_2 (Length: 281)

Name: NF5679_high_2
Description: NF5679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5679_high_2
NF5679_high_2
[»] chr3 (19 HSPs)
chr3 (10-214)||(39388473-39388665)
chr3 (215-266)||(9817992-9818043)
chr3 (215-266)||(27261990-27262041)
chr3 (215-264)||(53644751-53644800)
chr3 (215-266)||(47466818-47466869)
chr3 (216-266)||(37833425-37833475)
chr3 (216-266)||(45731356-45731406)
chr3 (216-253)||(7667483-7667520)
chr3 (216-253)||(25050315-25050352)
chr3 (215-254)||(8599677-8599716)
chr3 (219-254)||(22488419-22488454)
chr3 (215-254)||(40064886-40064925)
chr3 (215-254)||(43173643-43173682)
chr3 (215-254)||(49296835-49296874)
chr3 (216-266)||(9030426-9030476)
chr3 (215-253)||(25932168-25932206)
chr3 (216-266)||(53836654-53836704)
chr3 (215-252)||(49459132-49459169)
chr3 (217-253)||(7436859-7436895)
[»] chr2 (8 HSPs)
chr2 (215-264)||(41979445-41979494)
chr2 (215-266)||(13908700-13908751)
chr2 (215-266)||(33263496-33263547)
chr2 (220-266)||(38411938-38411984)
chr2 (215-253)||(3857860-3857898)
chr2 (215-253)||(12520329-12520367)
chr2 (220-253)||(40830382-40830415)
chr2 (217-253)||(18726919-18726955)
[»] chr5 (11 HSPs)
chr5 (215-266)||(21238203-21238254)
chr5 (214-266)||(33892261-33892313)
chr5 (215-266)||(32236888-32236939)
chr5 (219-266)||(25869407-25869454)
chr5 (215-254)||(35701973-35702012)
chr5 (215-266)||(37797459-37797510)
chr5 (220-266)||(31914106-31914152)
chr5 (215-264)||(2674509-2674558)
chr5 (215-264)||(19226289-19226338)
chr5 (216-253)||(29716216-29716253)
chr5 (217-254)||(34910230-34910267)
[»] chr1 (22 HSPs)
chr1 (215-266)||(7799150-7799201)
chr1 (215-266)||(1242637-1242688)
chr1 (215-254)||(3593999-3594038)
chr1 (215-254)||(5208613-5208652)
chr1 (215-254)||(27257570-27257609)
chr1 (215-266)||(33886292-33886343)
chr1 (215-266)||(33957909-33957960)
chr1 (215-254)||(34750991-34751030)
chr1 (213-266)||(1109016-1109069)
chr1 (213-254)||(8148071-8148112)
chr1 (215-254)||(4006089-4006128)
chr1 (215-254)||(9174612-9174651)
chr1 (215-254)||(11578454-11578493)
chr1 (215-254)||(18246882-18246921)
chr1 (215-254)||(25254290-25254329)
chr1 (215-254)||(26758331-26758370)
chr1 (215-266)||(30176981-30177032)
chr1 (215-266)||(34019709-34019760)
chr1 (215-254)||(41354162-41354201)
chr1 (215-254)||(51107924-51107963)
chr1 (215-253)||(47370882-47370920)
chr1 (212-253)||(51903599-51903640)
[»] scaffold0246 (2 HSPs)
scaffold0246 (214-266)||(25001-25053)
scaffold0246 (215-266)||(1974-2025)
[»] chr4 (18 HSPs)
chr4 (214-266)||(40487062-40487114)
chr4 (215-266)||(6486757-6486808)
chr4 (215-266)||(23670917-23670968)
chr4 (215-266)||(25014069-25014120)
chr4 (215-266)||(40163354-40163405)
chr4 (215-266)||(54561850-54561901)
chr4 (215-266)||(56423416-56423467)
chr4 (215-266)||(26449236-26449287)
chr4 (219-266)||(41469640-41469687)
chr4 (214-254)||(41206718-41206758)
chr4 (215-254)||(24965804-24965843)
chr4 (219-266)||(29965839-29965886)
chr4 (215-254)||(51967779-51967818)
chr4 (216-254)||(8084912-8084950)
chr4 (219-253)||(12755059-12755093)
chr4 (215-253)||(32890627-32890665)
chr4 (215-253)||(46862257-46862295)
chr4 (216-253)||(17503227-17503264)
[»] chr7 (8 HSPs)
chr7 (215-266)||(23017721-23017772)
chr7 (213-266)||(35314147-35314200)
chr7 (214-258)||(4639218-4639262)
chr7 (215-266)||(21024684-21024735)
chr7 (215-253)||(42611268-42611306)
chr7 (215-254)||(37915398-37915437)
chr7 (215-253)||(43172839-43172877)
chr7 (218-254)||(37391892-37391928)
[»] chr6 (8 HSPs)
chr6 (214-266)||(7834992-7835044)
chr6 (215-254)||(1462728-1462767)
chr6 (219-254)||(3000998-3001033)
chr6 (215-254)||(6789102-6789141)
chr6 (215-254)||(10110658-10110697)
chr6 (219-266)||(31995655-31995702)
chr6 (215-253)||(16439442-16439480)
chr6 (215-252)||(31975066-31975103)
[»] chr8 (7 HSPs)
chr8 (215-253)||(3007131-3007169)
chr8 (215-253)||(41394614-41394652)
chr8 (215-254)||(19484934-19484973)
chr8 (215-253)||(6387200-6387238)
chr8 (215-253)||(42423956-42423994)
chr8 (215-252)||(8029166-8029203)
chr8 (216-253)||(12737396-12737433)
[»] scaffold0002 (1 HSPs)
scaffold0002 (215-254)||(16137-16176)


Alignment Details
Target: chr3 (Bit Score: 124; Significance: 8e-64; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 39388665 - 39388473
Alignment:
Q  10 gcagagaggaattagagaaatcatacgcaaattttgtaattttgtttaaaaaagatacaattaattagaagtaggtataaacgacagttcttactagttt 109  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  39388665 gcagaaaggaattagagaaatcatacgcaaattttgtatttttgtttaaaacagatacaattaattagaagtaggtataaacgacaattcttgctagttt 39388566  T
Q  110 tgtctctaaatgcatcattgtacctttcatttcaacacacacaatcaatcaaataagtctatgttttacttttacctgttcaatttttaatttagtagct 209  Q
    |||||||||||| |            |||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  39388565 tgtctctaaatgaa------------tcatttcaacccacacaataaatcaaataagtctatgttttacttttaccttttcaatttttagtttagtagct 39388478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 9817992 - 9818043
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  9817992 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaact 9818043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 27262041 - 27261990
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  27262041 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaact 27261990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 53644751 - 53644800
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaa 264  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| ||||    
T  53644751 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaa 53644800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 47466818 - 47466869
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| ||||||||| |||||||||||||| |||| ||||||    
T  47466818 caaggttttacaactcgagagtttatctcaactcgttttagctatgtaaact 47466869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 37833475 - 37833425
Alignment:
Q  216 aaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||| | || ||||||||||||||||||||||||||||| ||||||    
T  37833475 aaggttttatagctcgagagtttacctcaactcgttttaactatgtaaact 37833425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 45731406 - 45731356
Alignment:
Q  216 aaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||| |||| |||||||||||||||||||||||| |||| ||||||    
T  45731406 aaggttttataactcgagagtttacctcaactcgttttagctatgtaaact 45731356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 7667520 - 7667483
Alignment:
Q  216 aaggttttacaactggagagtttacctcaactcgtttt 253  Q
    |||||||||||||| |||||||||||||||||||||||    
T  7667520 aaggttttacaacttgagagtttacctcaactcgtttt 7667483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 25050352 - 25050315
Alignment:
Q  216 aaggttttacaactggagagtttacctcaactcgtttt 253  Q
    |||||||||||||| |||||||||||||||||||||||    
T  25050352 aaggttttacaactcgagagtttacctcaactcgtttt 25050315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 8599716 - 8599677
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  8599716 caaggttttgcaactcgagagtttacctcaactcgtttta 8599677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 22488419 - 22488454
Alignment:
Q  219 gttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22488419 gttttacaactcgagagtttacctcaactcgtttta 22488454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 40064925 - 40064886
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  40064925 caagcttttacaactcgagagtttacctcaactcgtttta 40064886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 43173682 - 43173643
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  43173682 caaggttttgcaactcgagagtttacctcaactcgtttta 43173643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 49296874 - 49296835
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  49296874 caaggttttgcaactcgagagtttacctcaactcgtttta 49296835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 9030426 - 9030476
Alignment:
Q  216 aaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    |||||||||||| | ||||||||||||||| | |||||| |||||||||||    
T  9030426 aaggttttacaattcgagagtttacctcaatttgttttacctatataaact 9030476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 25932206 - 25932168
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttt 253  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  25932206 caaggttttacaacttgagagtttacttcaactcgtttt 25932168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 53836704 - 53836654
Alignment:
Q  216 aaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    |||||||| ||||| ||||||||||||| |||||||||| ||| |||||||    
T  53836704 aaggttttgcaacttgagagtttacctcgactcgttttatctagataaact 53836654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 49459169 - 49459132
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttt 252  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  49459169 caaggttttgcaactcgagagtttacctcaactcgttt 49459132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 7436859 - 7436895
Alignment:
Q  217 aggttttacaactggagagtttacctcaactcgtttt 253  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  7436859 aggttttgcaactcgagagtttacctcaactcgtttt 7436895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 41979494 - 41979445
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaa 264  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41979494 caaggttttacaacttgagagtttacctcaactcgttttaactatataaa 41979445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 13908751 - 13908700
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||| | ||||||||||||||||||||||||| ||| ||||||    
T  13908751 caaggttttacaattcgagagtttacctcaactcgttttaattatgtaaact 13908700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 33263547 - 33263496
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| ||||||||||||||||| |||||| |||| ||||||    
T  33263547 caaggttttacaactcgagagtttacctcaacttgttttagctatgtaaact 33263496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 38411938 - 38411984
Alignment:
Q  220 ttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    |||||||||| |||||||||||||||||||||||| |||| ||||||    
T  38411938 ttttacaactcgagagtttacctcaactcgttttagctatgtaaact 38411984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 3857860 - 3857898
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttt 253  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  3857860 caaggttttacaacttaagagtttacctcaactcgtttt 3857898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 12520367 - 12520329
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttt 253  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  12520367 caaggttttgcaacttgagagtttacctcaactcgtttt 12520329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 40830415 - 40830382
Alignment:
Q  220 ttttacaactggagagtttacctcaactcgtttt 253  Q
    |||||||||| |||||||||||||||||||||||    
T  40830415 ttttacaactcgagagtttacctcaactcgtttt 40830382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 18726919 - 18726955
Alignment:
Q  217 aggttttacaactggagagtttacctcaactcgtttt 253  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  18726919 aggttttgcaacttgagagtttacctcaactcgtttt 18726955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 21238203 - 21238254
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  21238203 caaggttttacaactcgagagtttacctcaactcgttttaactatgtaaact 21238254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 33892261 - 33892313
Alignment:
Q  214 acaaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    |||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  33892261 acaaggttttacaactcgagagtttacctcaactcgttttagctatgtaaact 33892313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 32236888 - 32236939
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    |||||||||||| || ||||||||||||||||||||||||||||| ||||||    
T  32236888 caaggttttacacctcgagagtttacctcaactcgttttaactatgtaaact 32236939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 25869454 - 25869407
Alignment:
Q  219 gttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  25869454 gttttacaactcgagagtttacctcaactcgttttagctatgtaaact 25869407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 35702012 - 35701973
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  35702012 caaggttttacaactcgagagtttacctcaactcgtttta 35701973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 37797459 - 37797510
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||| |||||||    
T  37797459 caaggttttgcaactcgagagtttacctcaactcgttttacctagataaact 37797510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 31914152 - 31914106
Alignment:
Q  220 ttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    |||||||||| |||||||||||||||||||||||| |||| ||||||    
T  31914152 ttttacaactcgagagtttacctcaactcgttttacctatgtaaact 31914106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 2674509 - 2674558
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaa 264  Q
    |||| |||||||| | |||||||||||||||||||||||| |||||||||    
T  2674509 caagattttacaattcgagagtttacctcaactcgttttagctatataaa 2674558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 19226338 - 19226289
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaa 264  Q
    ||||||||||||| |  ||||||||||||||||||||||| |||| ||||    
T  19226338 caaggttttacaatttaagagtttacctcaactcgttttagctatgtaaa 19226289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 29716216 - 29716253
Alignment:
Q  216 aaggttttacaactggagagtttacctcaactcgtttt 253  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  29716216 aaggttttgcaactcgagagtttacctcaactcgtttt 29716253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 34910267 - 34910230
Alignment:
Q  217 aggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  34910267 aggttttacaattcgagagtttacctcaactcgtttta 34910230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 7799201 - 7799150
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  7799201 caaggttttacaactcgagagtttacctcaactcgttttagctatataaact 7799150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 1242637 - 1242688
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||| |||||||    
T  1242637 caaggttttgcaactcgagagtttacctcaactcgttttacctagataaact 1242688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 3594038 - 3593999
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  3594038 caaggttttacaactcgagagtttacctcaactcgtttta 3593999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 5208613 - 5208652
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  5208613 caaggttttacaactcgagagtttacctcaactcgtttta 5208652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 27257570 - 27257609
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  27257570 caaggttttacaactcgagagtttacctcaactcgtttta 27257609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 33886292 - 33886343
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| ||||||||| |||||||||||||| |||| ||||||    
T  33886292 caaggttttacaactcgagagtttatctcaactcgttttagctatgtaaact 33886343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 33957960 - 33957909
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| ||||||||| |||||||||||||| |||| ||||||    
T  33957960 caaggttttacaactcgagagtttatctcaactcgttttagctatgtaaact 33957909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 34750991 - 34751030
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  34750991 caaggttttacaactcgagagtttacctcaactcgtttta 34751030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 1109069 - 1109016
Alignment:
Q  213 aacaaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| | ||||||||| |||||||||||||| |||| ||||||    
T  1109069 aacaaggttttacaattcgagagtttatctcaactcgttttagctatgtaaact 1109016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 8148112 - 8148071
Alignment:
Q  213 aacaaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  8148112 aacaaggttttgcaactcgagagtttacctcaactcgtttta 8148071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 4006128 - 4006089
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  4006128 caaggttttgcaactcgagagtttacctcaactcgtttta 4006089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 9174651 - 9174612
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  9174651 caaggttttgcaactcgagagtttacctcaactcgtttta 9174612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 11578454 - 11578493
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  11578454 caaggttttgcaactcgagagtttacctcaactcgtttta 11578493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 18246882 - 18246921
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  18246882 caaggttttgcaactcgagagtttacctcaactcgtttta 18246921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 25254329 - 25254290
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  25254329 caaggttttacaactcgagagtttacttcaactcgtttta 25254290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 26758370 - 26758331
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  26758370 caaggttttgcaactcgagagtttacctcaactcgtttta 26758331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 30177032 - 30176981
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||| | |||| ||||||||||||||||||| |||| ||||||    
T  30177032 caaggttttacaattcgagaatttacctcaactcgttttagctatgtaaact 30176981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 34019760 - 34019709
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| |||||||||||||||||  ||||| |||| ||||||    
T  34019760 caaggttttacaactcgagagtttacctcaacttattttagctatgtaaact 34019709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 41354201 - 41354162
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  41354201 caaggttttgcaactcgagagtttacctcaactcgtttta 41354162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 51107963 - 51107924
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  51107963 caaggttttgcaactcgagagtttacctcaactcgtttta 51107924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 47370882 - 47370920
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttt 253  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  47370882 caaggttttgcaactcgagagtttacctcaactcgtttt 47370920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 51903640 - 51903599
Alignment:
Q  212 aaacaaggttttacaactggagagtttacctcaactcgtttt 253  Q
    |||||| |||||||| || |||||||||||||||||||||||    
T  51903640 aaacaaagttttacatcttgagagtttacctcaactcgtttt 51903599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 25001 - 25053
Alignment:
Q  214 acaaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    |||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  25001 acaaggttttacaactcgagagtttacctcaactcgttttagctatgtaaact 25053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 2025 - 1974
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| | |||||||||||||||||||||| |||| ||||||    
T  2025 caaggttttacaactcgggagtttacctcaactcgttttagctatgtaaact 1974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 40487062 - 40487114
Alignment:
Q  214 acaaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    |||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  40487062 acaaggttttacaactcgagagtttacctcaactcgttttagctatgtaaact 40487114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 6486757 - 6486808
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  6486757 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaact 6486808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 23670917 - 23670968
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  23670917 caaggttttacaactcgagagtttacctcaactcattttacctatataaact 23670968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 25014120 - 25014069
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  25014120 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaact 25014069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 40163405 - 40163354
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  40163405 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaact 40163354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 54561901 - 54561850
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  54561901 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaact 54561850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 56423416 - 56423467
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  56423416 caaggttttacaactcgagagtttacctcaactcgttttagctatgtaaact 56423467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 26449287 - 26449236
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| || ||||||||||||||||||||| |||| ||||||    
T  26449287 caaggttttacaactcgatagtttacctcaactcgttttagctatgtaaact 26449236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 41469640 - 41469687
Alignment:
Q  219 gttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  41469640 gttttacaactcgagagtttacctcaactcgttttagctatgtaaact 41469687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 41206718 - 41206758
Alignment:
Q  214 acaaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  41206718 acaaggttttacaactcaagagtttacctcaactcgtttta 41206758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 24965804 - 24965843
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  24965804 caaggttttgcaactcgagagtttacctcaactcgtttta 24965843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 29965839 - 29965886
Alignment:
Q  219 gttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||| || ||||||||||||||||||||| |||| ||||||    
T  29965839 gttttacaactcgaaagtttacctcaactcgttttagctatgtaaact 29965886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 51967818 - 51967779
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  51967818 caaggttttataactcgagagtttacctcaactcgtttta 51967779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 8084950 - 8084912
Alignment:
Q  216 aaggttttacaactggagagtttacctcaactcgtttta 254  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  8084950 aaggttttgcaactcgagagtttacctcaactcgtttta 8084912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 253
Target Start/End: Complemental strand, 12755093 - 12755059
Alignment:
Q  219 gttttacaactggagagtttacctcaactcgtttt 253  Q
    ||||||||||| |||||||||||||||||||||||    
T  12755093 gttttacaactcgagagtttacctcaactcgtttt 12755059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 32890665 - 32890627
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttt 253  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  32890665 caaggttttgcaactcgagagtttacctcaactcgtttt 32890627  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 46862257 - 46862295
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttt 253  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  46862257 caaggttttgcaactcgagagtttacctcaactcgtttt 46862295  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 17503227 - 17503264
Alignment:
Q  216 aaggttttacaactggagagtttacctcaactcgtttt 253  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  17503227 aaggttttacaacttgagagtttacctcaactcatttt 17503264  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 23017772 - 23017721
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| ||||||||||||||||||||||| |||| |||||||    
T  23017772 caaggttttacaactcgagagtttacctcaactcgttttgactagataaact 23017721  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 35314200 - 35314147
Alignment:
Q  213 aacaaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  35314200 aacaaagttttacaacttgagagtttacctcaactcgttttagctatgtaaact 35314147  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 4639218 - 4639262
Alignment:
Q  214 acaaggttttacaactggagagtttacctcaactcgttttaacta 258  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||    
T  4639218 acaaggttttgcaactcgagagtttacctcaactcgttttaacta 4639262  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 21024735 - 21024684
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||||||| ||||||||||||||||| |||||| |||| ||||||    
T  21024735 caaggttttacaactcgagagtttacctcaactagttttagctatgtaaact 21024684  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 42611306 - 42611268
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttt 253  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  42611306 caaggttttacaactcgagagtttacctcaactcgtttt 42611268  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 37915398 - 37915437
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  37915398 caaggttttgcaactcgagagtttacctcaactcgtttta 37915437  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 43172877 - 43172839
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttt 253  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  43172877 caaggttttacaactcgagagtttacctcaactcatttt 43172839  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 37391892 - 37391928
Alignment:
Q  218 ggttttacaactggagagtttacctcaactcgtttta 254  Q
    |||||||||||| |||||||||||||||||| |||||    
T  37391892 ggttttacaactcgagagtttacctcaactcatttta 37391928  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 7834992 - 7835044
Alignment:
Q  214 acaaggttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    |||| ||||||||||| |||||||||||||||||||||||| |||| ||||||    
T  7834992 acaaagttttacaacttgagagtttacctcaactcgttttagctatgtaaact 7835044  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 1462728 - 1462767
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  1462728 caaggttttgcaactcgagagtttacctcaactcgtttta 1462767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 254
Target Start/End: Complemental strand, 3001033 - 3000998
Alignment:
Q  219 gttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3001033 gttttacaactcgagagtttacctcaactcgtttta 3000998  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 6789141 - 6789102
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  6789141 caaggttttgcaactcgagagtttacctcaactcgtttta 6789102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 10110658 - 10110697
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  10110658 caaggttttgcaactcgagagtttacctcaactcgtttta 10110697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 31995655 - 31995702
Alignment:
Q  219 gttttacaactggagagtttacctcaactcgttttaactatataaact 266  Q
    ||||||||||| ||||||||||| |||||||||||| |||| ||||||    
T  31995655 gttttacaactcgagagtttaccacaactcgttttagctatgtaaact 31995702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 16439480 - 16439442
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttt 253  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  16439480 caaggtttttcaactcgagagtttacctcaactcgtttt 16439442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 31975066 - 31975103
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttt 252  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  31975066 caaggttttgcaactcgagagtttacctcaactcgttt 31975103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 3007131 - 3007169
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttt 253  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  3007131 caaggttttacaactcgagagtttacctcaactcgtttt 3007169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 41394652 - 41394614
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttt 253  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  41394652 caaggttttacaactcgagagtttacctcaactcgtttt 41394614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 19484973 - 19484934
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  19484973 caaggttttgcaactcgagagtttacctcaactcgtttta 19484934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 6387200 - 6387238
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttt 253  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  6387200 caaggttttacaactcaagagtttacctcaactcgtttt 6387238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 42423994 - 42423956
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttt 253  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  42423994 caaggttttgcaacttgagagtttacctcaactcgtttt 42423956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 8029166 - 8029203
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgttt 252  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  8029166 caaggttttgcaactcgagagtttacctcaactcgttt 8029203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 12737396 - 12737433
Alignment:
Q  216 aaggttttacaactggagagtttacctcaactcgtttt 253  Q
    |||||||||||| | |||||||||||||||||||||||    
T  12737396 aaggttttacaattcgagagtttacctcaactcgtttt 12737433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 16137 - 16176
Alignment:
Q  215 caaggttttacaactggagagtttacctcaactcgtttta 254  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  16137 caaggttttgcaactcgagagtttacctcaactcgtttta 16176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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