View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680-Insertion-1 (Length: 211)
Name: NF5680-Insertion-1
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680-Insertion-1 |
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| [»] scaffold0651 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 1725 - 1524
Alignment:
| Q |
10 |
agcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaatttat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1725 |
agcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcataggattttgatgtaaacgaatgcgagtctaaaaggagtgaggaatttat |
1626 |
T |
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| Q |
110 |
gcttgagacccctttgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttattgagacatagcaaaccaca |
209 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1625 |
gcttgagacccctttgtacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttactgagacatagcaaaccaca |
1526 |
T |
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| Q |
210 |
aa |
211 |
Q |
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|| |
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| T |
1525 |
aa |
1524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 4098 - 4301
Alignment:
| Q |
8 |
gcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaattt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||||||| ||| | |
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| T |
4098 |
gcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagagacataggactttgatgtaagcgaatgcgagtctaaaaggagtgaggaacct |
4197 |
T |
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| Q |
108 |
atgcttgagacccctttgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttattgagacatagcaaacca |
207 |
Q |
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| T |
4198 |
aagcttgagagccctctgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttgctaagacagagcaaacca |
4297 |
T |
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| Q |
208 |
caaa |
211 |
Q |
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|||| |
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| T |
4298 |
caaa |
4301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 31331811 - 31331610
Alignment:
| Q |
10 |
agcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaatttat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31331811 |
agcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcataggattttgatgtaaacgaatgcgagtctaaaaggagtgaggaatttat |
31331712 |
T |
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| Q |
110 |
gcttgagacccctttgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttattgagacatagcaaaccaca |
209 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31331711 |
gcttgagacccctttgtacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttactgagacatagcaaaccaca |
31331612 |
T |
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| Q |
210 |
aa |
211 |
Q |
| |
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|| |
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| T |
31331611 |
aa |
31331610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 31319572 - 31319369
Alignment:
| Q |
8 |
gcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaattt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||||||| ||| | |
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| T |
31319572 |
gcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagagacataggactttgatgtaagcgaatgcgagtctaaaaggagtgaggaacct |
31319473 |
T |
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| Q |
108 |
atgcttgagacccctttgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttattgagacatagcaaacca |
207 |
Q |
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| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| |
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| T |
31319472 |
aagcttgagagccctctgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttgctaagacagagcaaacca |
31319373 |
T |
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| Q |
208 |
caaa |
211 |
Q |
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|||| |
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| T |
31319372 |
caaa |
31319369 |
T |
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