View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680-Insertion-2 (Length: 1075)
Name: NF5680-Insertion-2
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 412
Target Start/End: Original strand, 49150245 - 49150648
Alignment:
| Q |
8 |
tgttcatgtcagtaatgaacttttccactcctaattaacnnnnnnnnnnncatggttacacaactataataaatgctatactatgtttatgtaattgtta |
107 |
Q |
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| T |
49150245 |
tgttcatgtcagtaatgaacttttccactcctaattaaccaaaaaaaa---atggttacacaattataataaatgctatactatgtttatgtaattgtta |
49150341 |
T |
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| Q |
108 |
cattatagggtcaaatnnnnnnn--catggtcaaaagagacaagacatggaatgaatacctttacacttagatatggcttttacaacgtttctttcgcaa |
205 |
Q |
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| T |
49150342 |
cattatagggtcaaataaaaaaaaacatggtcaaaagagacaagacatggaatcaatacctttacacttagatatggcttttacaacgtttctttcgcaa |
49150441 |
T |
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| Q |
206 |
gcgttacaatgcattgaaaccttgtattccacagttattaatttgttttgttcaacttttttgttctttgccattgaattgaaacgttgaaatatgaatg |
305 |
Q |
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| T |
49150442 |
gcgttacaatgcattgaaaccttgtattccacagttattaatttgttttgttcaacttttttgttctttgccattgaattgaaacgttgaaatatgaatg |
49150541 |
T |
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| Q |
306 |
tgacaatgccatgcaaataaaaaatgaaaaggatttcagaaattattgtgttgaaattgtgaggaaagttgtttacattggttaaaatgaaaatatctcc |
405 |
Q |
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| T |
49150542 |
tgacaatgccatgcaaataaaaaatgaaaaggatttcagaaattattgtgttgaaattgtgaggaaagttgtttacattggttaaaatgaaaatatctcc |
49150641 |
T |
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| Q |
406 |
agaaaag |
412 |
Q |
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| T |
49150642 |
agaaaag |
49150648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 466 - 947
Target Start/End: Original strand, 49150693 - 49151188
Alignment:
| Q |
466 |
atagtactggtttcggaaagttgaaatattaacgttgcaatttttaaatttattttaattttaaatgactcgtttgtaaaaaattacttacttatcttgt |
565 |
Q |
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| T |
49150693 |
atagtactggtttcggaaagttgaaatattaacgttgcaatttttaaatttattttaattttaaatgattcgtttgtaaaaaattactttcttatcttgt |
49150792 |
T |
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| Q |
566 |
cnnnnnnngtcaccctctcttattttgtttcttttttatttcacttaattggataaatttagagcaaacaattgtttagaagcaattaacattgacattt |
665 |
Q |
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| T |
49150793 |
caaaaaaagtcaccctcttttattttgtttcttttttatttcacttaattggataaatttagagcaaacaattgtttagaagtaattaacattgacattt |
49150892 |
T |
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| Q |
666 |
gaaatgataaaggaacaacnnnnnnncttaaattgtggcttaaagttttattattgatat-aaagaaaatatttatttaggttataatatattaaaatgc |
764 |
Q |
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| T |
49150893 |
gaaatgataaaggaaaaactttttttcttaaattgtggcttaaag-tttattattgatataaaaaaaaaaaattatttaggttataatatattaaaatgc |
49150991 |
T |
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| Q |
765 |
aatacata---------tactaaagaaaattgtaattcaaacatctctcaacgaaggaaggagaatatggtttactttataatattttcttcttaaggga |
855 |
Q |
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| T |
49150992 |
gatacatatttaatttttactgaagaaaattgtaattcaaacatctctcaaggaaggaatgagaatatggtttactttataatattttcttcttaaggga |
49151091 |
T |
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| Q |
856 |
ggaacatatataatttagt----------aattc-aatttctcttgaagaaaagaggtgtaaattactct-aataatatcaaaccatcaaataaaatgcc |
943 |
Q |
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| T |
49151092 |
ggaacgtatataatttaataagaggcatgaattcaaatttctcttga-------aggtgtaaattactctaaataatatcaaaccatcaaataaaatgcc |
49151184 |
T |
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