View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680-Insertion-3 (Length: 947)
Name: NF5680-Insertion-3
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 11 - 590
Target Start/End: Original strand, 47707088 - 47707694
Alignment:
| Q |
11 |
cacctattgaaacagatcgtttctcaactgctagcagctccaccttgttcaattcatgctcagatattgatgatgatgaagaagacagaacctcgttttc |
110 |
Q |
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| T |
47707088 |
cacctattgaaacagatcgtttctcaactgctagcagctccaccttgttcaattcatgctcagatattgatgatgatgaagaagacagaacctcgttttc |
47707187 |
T |
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| Q |
111 |
gtcaaataaacattataatcctctgttttcttcagacacttgccaagcttccgatgtctgcaacatgagaatgcaaaggtatgatatgaagtgaactcaa |
210 |
Q |
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| T |
47707188 |
gtcaaataaacattataatcctctgttttcttcagacacttgccaagcttccgatgtctgcaacatgagaatgcaaaggtatgatatgaagtgaactcaa |
47707287 |
T |
|
| Q |
211 |
attctggtttaagtaaattttaaatttgatcatagctnnnnnnntgacatgttaattctttttgttaccttatgaacaattaagccagcaagatggaaag |
310 |
Q |
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| T |
47707288 |
attctggtttacgtaaattttaaatttgatcatagctaaaaaaatgacatgttagttctttttgttaccttatgaacaattaagccagcaagatggaaag |
47707387 |
T |
|
| Q |
311 |
caccaacaaagatgtatagaagaaggtaaattaag-tagtttagttcttttacattttcataatctaagaatag------nnnnnnnnnnctgcatttgt |
403 |
Q |
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| T |
47707388 |
caccaacaaagatgtatagaagaaggtaaattaagttagtttagttcttttgcattttcataatctaagaatagtttttttttttcttttctgcatttgt |
47707487 |
T |
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| Q |
404 |
taaattaaaaaattggttagaatttgactttataacctcaag--------------------agacgaattaattactccttttgattatatatcagtct |
483 |
Q |
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| T |
47707488 |
taaattaaaaaattggttagaatttgactttataacctcaagagacgaatttataatctctaagacgaattaattactccttttgattatgtatcagtct |
47707587 |
T |
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| Q |
484 |
gtgtgacacatgaaacattgaacaagaatgtctgtgtttgcggcatggttgtgccgaagaaattcaccgaggaatctctactatcagctgctctatttag |
583 |
Q |
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| T |
47707588 |
gtgtgacacatgaaacattgaacaagaatgtctgtgtttgcggcgtggttgtgccgaagaaattcaccgaggaatctctactatcagctgctctatttag |
47707687 |
T |
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| Q |
584 |
ttcactt |
590 |
Q |
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| T |
47707688 |
ttcactt |
47707694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 588 - 947
Target Start/End: Original strand, 47707746 - 47708106
Alignment:
| Q |
588 |
cttgggcatgatgtttctcatgtgatgaaatctaaaagggtgttgcacaagacaaagaggttgttatttgattgtgtgagagaacttgcaaaaagtcttc |
687 |
Q |
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| T |
47707746 |
cttgggcatgatgtttctcatgtgatgaaatctaaaagggtgttgcacaagacaaagaggttgttatttgattgtgtgagagaacttacaaaaaatcttc |
47707845 |
T |
|
| Q |
688 |
cagataaagattgtaagcaattcatgggtgccgaaaagttggggaagatgttatgggagaggacaaaagaatggagcgaaagtggtggaaattatgagag |
787 |
Q |
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| T |
47707846 |
cagaaaaagattgtaagcaattcatgggtgccgaaaagttggggaagatgttatgggagaggacaaaagaatggagtgaaagaggtggaaattatgagag |
47707945 |
T |
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| Q |
788 |
aaatctaagtaacttgctgaatttggattgcttggattcaattaatgaatggagtgaatttaagactgaggtgaaagatgttagtattgagattgctgat |
887 |
Q |
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| T |
47707946 |
aaatctaagtaacttgctgaatttggattacttggattcaattaatgaatggagtgaatttaagaccgaggtgaaagatgttagtattgagattgctgat |
47708045 |
T |
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| Q |
888 |
gcaattttggaatgtgtgatca-ggatgaagtagtatcagatatcattgaaattttatcac |
947 |
Q |
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| T |
47708046 |
gcaattttggaatgtgtgattagggatgaagtagtatcagatatcattgaaattttatcac |
47708106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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