View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680-Insertion-5 (Length: 928)
Name: NF5680-Insertion-5
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680-Insertion-5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 846; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 846; E-Value: 0
Query Start/End: Original strand, 8 - 928
Target Start/End: Original strand, 47839492 - 47840415
Alignment:
| Q |
8 |
ttttgtggggtggagggccggggcataggaagataaactgagtcagtttggaaaaggtatatcttccaaagaagagggaggccttggagtaaagtatttg |
107 |
Q |
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| T |
47839492 |
ttttgtggggtggagggccggggcataggaagataaactgagtcagtttggaaaaggtatatcttccaaagaagagggaggccttggagtaaagtatttg |
47839591 |
T |
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| Q |
108 |
catttatttaatttatacttgtcgagaaacgggtgtgaagatgcttataggattctaatgctctttggcatgacttaatcaaatttcagtattgaaggat |
207 |
Q |
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| T |
47839592 |
catttatttaatttatgcttttcgagaaaggggtgtgaagatgcttataggattctaatgctctttggcatgacttaatcaaatttcagtattgaaggat |
47839691 |
T |
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| Q |
208 |
tgagaaaagttgtaaagtcctgaagggttaattagtggaagatgtgattcattatggyggagagatttatgttgaattggcagggagtttgacgtcaact |
307 |
Q |
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| T |
47839692 |
tgagaaaagttgtaaagtcctgaagggttaattagtggaagatgtgattcattatggtggagagatttatgttgaattggcagggagtttgacgtcaact |
47839791 |
T |
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| Q |
308 |
caaactggttttcggcggtgggagaatacacttttttggaaggatttgtggataggggagcagcccctgtatatcagatttcctcgtttgtgttgtgttg |
407 |
Q |
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| T |
47839792 |
caaactggttttcgacggtgggagaatacacttttttggaaggatttgtggataggggagcagcccctgtatatcagatttcctcgtttgtgttgtgttg |
47839891 |
T |
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| Q |
408 |
taaatgacaaatctatttccatggcagataaatgatcatggcaggttggtggttgtgtattttcttggagcttgaacaacattttgaataacgtttgaca |
507 |
Q |
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| T |
47839892 |
taaatgacaaatctatttccatggcagataaatggtcatggcaggttggtagttgtgtattttcttggagcttgaacaacattttgaataacgtttgaca |
47839991 |
T |
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| Q |
508 |
gtgtggaaactgctg--ttttgagaagtctggtacggaaggttcgtccgtgggtcgaagaggcagattcttttgtttggctacctgaatcgatgaagtgt |
605 |
Q |
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| T |
47839992 |
gtgtggaaactgctgttttttgagaagtctggtacggaaggttcgtccgtgggtcgaagaggcagattcttttgtttggctacctgaatcgatgaagtgt |
47840091 |
T |
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| Q |
606 |
tttactgtgaaaagctgctagatgctgttgtctaatttccggacagttgaggacacggacggtgactttttggcagctgtgagacaactattgataacat |
705 |
Q |
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| T |
47840092 |
tttactgtgaaaagctgctagatgctgttgtctaatttccggacagttgaggacatggacggtgactttttggcagctgtgagacaactattgataacat |
47840191 |
T |
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| Q |
706 |
tggtaccttaaaaaatttgtgtttttggttggcgattgcttcaagagaaaatgacaataagattcatcaacaaagttgtgnnnnnnnctttaatgaaata |
805 |
Q |
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| T |
47840192 |
tggtaccttaaaaaatttgtgtttttggttggcgattgcttcaagagaaaatgacaataagattcatcagcaaagttgtgtttttttctttaatgaaatc |
47840291 |
T |
|
| Q |
806 |
gagacagagggacatttgtttgtaatgtatccgaaaaccaaggagattcggaatttgatttttaagtggatgaagtggaatgcaataggatggcgtgaag |
905 |
Q |
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| T |
47840292 |
gagacagagggacatttgtttgtaatgtatccgaaaaccaaggagattcggaatttgatttttaagtggatgaagtggaatgcaataggatggcgtgaag |
47840391 |
T |
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| Q |
906 |
agttgatag-aaaattccttgttg |
928 |
Q |
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| T |
47840392 |
agttgatagaaaaattccttgttg |
47840415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 862 - 913
Target Start/End: Original strand, 26322641 - 26322692
Alignment:
| Q |
862 |
gatttttaagtggatgaagtggaatgcaataggatggcgtgaagagttgata |
913 |
Q |
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| T |
26322641 |
gatttttaattggatgaagtggaatgcaataggttggggagaagagttgata |
26322692 |
T |
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