View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680-Insertion-7 (Length: 735)
Name: NF5680-Insertion-7
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 451 - 719
Target Start/End: Complemental strand, 45512530 - 45512262
Alignment:
| Q |
451 |
attcatgagatcaagcttggtaacatgtccagtaacattgtcacaaccaatgccttcccattgacaacattgagtgcctttccatgatgaaagcttgttt |
550 |
Q |
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| T |
45512530 |
attcatgagatcaagtttgacaacatgtctagtaacattgtcacaaccaatgccttcccattggcaacagtgagtgcctttccatgatgaaagcttgttt |
45512431 |
T |
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| Q |
551 |
ggtgaatcttttgcaatggatgctttgaaatcgagaagggcttgcctctctttttcaacgcaggggatgtttgaatttacacacaagcatatttgtgcaa |
650 |
Q |
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| T |
45512430 |
ggtgaatcatgtgcaatggatgctttgaaattgagaagggcttgcctctctttttcaatacaggggatgtttgaatttacacacaagcatatttgtgcaa |
45512331 |
T |
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| Q |
651 |
tttcaatcaacaccaaaagcactacacgtttgtaatatcttcccatgctttctctctgtgtttctattg |
719 |
Q |
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| T |
45512330 |
tttcaatcaacaccaaaagtactacacatttgtaatatcttcccatgttttctatctctgtttctattg |
45512262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 62 - 422
Target Start/End: Complemental strand, 45512983 - 45512625
Alignment:
| Q |
62 |
attgagtacctggaacaagttgtgtgctgtgtgattgagccgaataccactcaagttaaggtgtctgagtgaatgaaggtttgacatccaactggtgtcg |
161 |
Q |
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| T |
45512983 |
attgagtacctggaacaagttgcgcg---tgtcattgagacgaataccactcaagtcaaggtgtttgagtgagtgaaggtttgaaatccaactggtgccg |
45512887 |
T |
|
| Q |
162 |
tcatccatttgtaatcttctctctgcaaaatctgtagagaaatagtaatcggagctgagatcaagaaactgtaggttcttgagatttccgagactgttgg |
261 |
Q |
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| T |
45512886 |
tcatccatttgtaattctctctcttcaaattgcgtaaggtaatagtaattgaagctgagatcaaggaatcgtaggttcttgagatttctgagactgttgg |
45512787 |
T |
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| Q |
262 |
gaatcttcccgctaaaacgagcatannnnnnnnnnnnntgctcaaggcttcccatggaaccgatgaacatgggaattggactctcacggaaatcacttcc |
361 |
Q |
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| T |
45512786 |
gaatcctcccgctaagacgagcatgagacagagagagatactcaaggcgtcccatggaacccaagaacataggaattggactcccactgaaattatttcc |
45512687 |
T |
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| Q |
362 |
agacaagtccaaat-agtcaagtgttccaattgcaacaaagatgaactgacatttggagcaa |
422 |
Q |
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| T |
45512686 |
agacaagtccaaataagtcaagtgttccaattgcaacaaagatgagctcacatttggagcaa |
45512625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 302 - 405
Target Start/End: Original strand, 22848813 - 22848917
Alignment:
| Q |
302 |
ctcaaggcttcccatggaaccgatgaacatgggaattggactctcacggaaatcacttccagacaagtccaaat-agtcaagtgttccaattgcaacaaa |
400 |
Q |
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|||||| | |||||||||||| | |||||| |||||||||||| | ||||||| |||||| ||||||||||| |||||||| |||||| ||||||||| |
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| T |
22848813 |
ctcaagacgtcccatggaacctacgaacataggaattggactcaaattgaaatcatttccagtcaagtccaaataagtcaagtattccaagtgcaacaaa |
22848912 |
T |
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| Q |
401 |
gatga |
405 |
Q |
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||||| |
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| T |
22848913 |
gatga |
22848917 |
T |
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