View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680-Insertion-8 (Length: 446)
Name: NF5680-Insertion-8
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680-Insertion-8 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 446
Target Start/End: Complemental strand, 31910417 - 31909979
Alignment:
| Q |
8 |
taaaatttgtgaaagagtgtaatagagattgagattgaatgaaaaatgtgatctgttgcggaccacggtccattttagcaggtcccataattctatgcta |
107 |
Q |
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| T |
31910417 |
taaaatttgtgaaagagtgtaatagagattgagattgaatgaaaaatgtgatctgttgcggaccacggtccattttagcagctcccacaattctatgcta |
31910318 |
T |
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| Q |
108 |
gcaaacatcatagataagttacaataaaagaaaaagattcagctgtggtgagatacaaaagaaaaagataataaatgtgggttacattacaccaaaattt |
207 |
Q |
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| T |
31910317 |
gcaaacatcatagataagttacaataaaagaaaaagattcagctgtggtgagatacaaaagaaaaagataataaatgtgggttacattacaccaaaattt |
31910218 |
T |
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| Q |
208 |
attgaagagtagtccagccccaatgttgaacttctgaatatgtttaactgaaccatcatgagtgcattatgcatccacaaggacctgaatcaaatcccaa |
307 |
Q |
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| T |
31910217 |
attgaagagtagtccatccccaatgttgaacttctgaatatgtttaactgaaccatcatgagtgcattctgcatccacaaggacctgaatcaaatcccaa |
31910118 |
T |
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| Q |
308 |
cagaaacagatgataaaattttaagtgtgaacgaaagcaaaaaactatgcaagatgaattcaaagtaaagttcagtctcattttcagatacagtcttgca |
407 |
Q |
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| T |
31910117 |
cagaaacagatgataaaattttaagtgtgaacgaaagcgaaaaactatgcaagatgaattcaaagtgaagttcagtctcattttcagatacagtcttgca |
31910018 |
T |
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| Q |
408 |
taattctagacaccacttgtggagtgccacactcctttg |
446 |
Q |
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| T |
31910017 |
taattctagacaccacttgtggagtgccacactcctttg |
31909979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 220 - 377
Target Start/End: Complemental strand, 31901670 - 31901517
Alignment:
| Q |
220 |
tccagccccaatgttgaa-cttctgaatatgtttaactgaaccatcatgagtgcattatgcatccacaaggacctgaatcaaatcccaacagaaacagat |
318 |
Q |
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| T |
31901670 |
tccagccccattgttcaaacttctgaatatgtttaattgagccatcatgagtgcattctgcatccacaaggacctgaatcaaatccc------aacatat |
31901577 |
T |
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| Q |
319 |
gat-aaaattttaagtgtgaacgaaagcaaaaaactatgcaagatgaattcaaagtaaag |
377 |
Q |
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| T |
31901576 |
gatcaaaattttaagggtaaaactaagcaaacaactatgcatgatgaattcaaaataaag |
31901517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 31903049 - 31902967
Alignment:
| Q |
40 |
gattgaatgaaaaatgtgatctgttgcggaccacggtccattttagcaggtcccataattctatgctagcaaacatcatagat |
122 |
Q |
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| T |
31903049 |
gattgaatgaataatgcgatctgttgtggaccatggtccattttagtcgttcccaggattctatgctagcaaacatcatagat |
31902967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 446
Target Start/End: Complemental strand, 31901387 - 31901355
Alignment:
| Q |
414 |
tagacaccacttgtggagtgccacactcctttg |
446 |
Q |
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| T |
31901387 |
tagacaccacttgtggagtgccacacttctttg |
31901355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 13643290 - 13643241
Alignment:
| Q |
38 |
gagattgaatgaaaaatgtgatctgttgcggaccacggtccattttagca |
87 |
Q |
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| T |
13643290 |
gagattgaatgaaaaatgtgatatgttgtggacaatggttcattttagca |
13643241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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