View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5680_high_1 (Length: 730)

Name: NF5680_high_1
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5680_high_1
NF5680_high_1
[»] chr7 (1 HSPs)
chr7 (1-720)||(33016558-33017280)


Alignment Details
Target: chr7 (Bit Score: 684; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 1 - 720
Target Start/End: Original strand, 33016558 - 33017280
Alignment:
Q  1 caatcagtggaggaaggtctaaataagatcccaatcctagagaatttgcaatagtagcccaaatatcataattaacattggaactgaaagcaatttcgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33016558 caatcagtggaggaaggtctaaataagatcccaatcctagagaatttgcaatagtagcccaaatatcataattaacattggaactgaaagcaatttcgga 33016657  T
Q  101 tttattcaagttaattgcctggcctgaggcagcctcataggtatctataannnnnnngatatctcggtttcacctatgttgaccctgaaaaataagaaag 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  33016658 tttattcaagttaattgcctggcatgaggcagcctcataggtatctataatttttttgatatctcggtttcacctatgttgaccctgaaaaataagaaag 33016757  T
Q  201 aatcatcatcgaaaaaaggtggctaatagaaggcgtacctcgatggattttggacctatgaatagctccttgtgaaactctatgcttgataagacagaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33016758 aatcatcatcgaaaaaaggtggctaatagaaggcgtacctcgatggattttggacctatgaatagctccttgtgaaactctatgcttgataagacagaga 33016857  T
Q  301 tgttctttgcacatatgatatagaggtaaggcacttcatttggaaaatcggaccaactgcttcattattgaggcagacgttgtagttgacagaggtcaca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33016858 tgttctttgcacatatgatatagaggtaaggcacttcatttggaaaatcggaccaactgcttcattattgaggcagacgttgtagttgacagaggtcaca 33016957  T
Q  401 cataaccaaacaaatccatttattcattgattggagaagcctgcctttgacataacatctgagaggtatcgcccatcaacttgatcaaaagcttttgatt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33016958 cataaccaaacaaatccatttattcattgattggagaagcctgcctttgacataacatctgagaggtatcgcccatcaacttgatcaaaagcttttgatt 33017057  T
Q  501 atgtcaagcttcagaactacatcaccaatacagccctgagatttagatttcatgtagtgaattatttcaaaagcaacaagcgcattatcgagaatggttc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33017058 atgtcaagcttcagaactacatcaccaatacagccctgagatttagatttcatgtagtgaattatttcaaaagcaacaagcgcattatcgagaatggttc 33017157  T
Q  601 tacctcggacaaaagccgcttgctctagagttataaacatggcgagaagaggttttaatctgtttgacaatacctc---ttataggagtataacacattg 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  33017158 tacctcggacaaaagccgcttgctctagagttataaacatggcgagaagaggttttaatctgtttgacaatacctcttattataggagtataacacattg 33017257  T
Q  698 taattggtctatagtctttgatg 720  Q
    |||||||||||||||||||||||    
T  33017258 taattggtctatagtctttgatg 33017280  T

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