View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_high_11 (Length: 356)
Name: NF5680_high_11
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 25652300 - 25652037
Alignment:
| Q |
1 |
tgtttgtgtctgtgtttgtgtttgaatgcatgcttcactcttcagacatgttgtaaagcaattcttctctatgtcaatgtcaccaaggatatatagttgt |
100 |
Q |
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| T |
25652300 |
tgtttgtgtccgtgtttgtgtttgaattcaagcttcactcttcagacatgttttcaagcaattcttctctatgtcaatgttaccaaggata----gttgt |
25652205 |
T |
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| Q |
101 |
atannnnnnnattaatcactaatgaatgcatggctaattctataatcactgacaacattgagatgccatgactgggtcagaccgagac----tcggccgg |
196 |
Q |
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| T |
25652204 |
atatttttttattaatcactaatgaatgcatggctaattctataatcactgacaacattgagatgccatgactgggtcagacccagactcggtcggccgg |
25652105 |
T |
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| Q |
197 |
tatatgttcataacaatttaaagatcatttgttcaaaaagtaattgtttttcaaaatctttctagttat |
265 |
Q |
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| T |
25652104 |
tatatgttaataac-atttaaagattatttgttcaaaaagtaattgtttttcaaaatctttctagttat |
25652037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 25652014 - 25651965
Alignment:
| Q |
291 |
taagtgcaggatcgagcatggtatagagtgctaattagcatgaacactca |
340 |
Q |
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| T |
25652014 |
taagtgcaggatcgagcatggtatagagtgctaattagcatgaacactca |
25651965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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