View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_high_12 (Length: 355)
Name: NF5680_high_12
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 21 - 347
Target Start/End: Complemental strand, 9086882 - 9086556
Alignment:
| Q |
21 |
ctccaaacgtgacattgaatgttttaaacgcaaaagaatacagaaaactatctatattccaagctctcttatttttgctagtaccggtaagatgagacga |
120 |
Q |
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| T |
9086882 |
ctccaaacgtgacattgaatgttttaaccgcaaaagaatacggaaaactatctatattccaaactctcttatttttgctagtaccggtaagatgagacga |
9086783 |
T |
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| Q |
121 |
aattaagaaactaatttttgtttcttaatgttctgtttatctctttttgttgggaagaaaattctaacttttaatatgatattgcaggttcaattatatt |
220 |
Q |
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| T |
9086782 |
aactaagaaactactttttgtttcttaatgttctgtttatctgtttttgttgggaagaaaattctaacttttaatatgatattgcagggtcaattatatt |
9086683 |
T |
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| Q |
221 |
ggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaggaagatcaagttagaattgataagtttttagatgattttagagca |
320 |
Q |
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| T |
9086682 |
ggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaagaagatcaagttagaattgataagtttttagatgattttagagca |
9086583 |
T |
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| Q |
321 |
caaaagcctgctagattttcctatgct |
347 |
Q |
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| T |
9086582 |
caaaagcctgctagattttcctatgct |
9086556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 200 - 340
Target Start/End: Complemental strand, 9125872 - 9125732
Alignment:
| Q |
200 |
tattgcaggttcaattatattggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaggaagatcaagttagaattgataag |
299 |
Q |
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| T |
9125872 |
tattgcaggttcaattttattggggttgctcaccattgcatttataaagatttatctacatttcagagaaaaagaagaagatcaagttagagttgatagg |
9125773 |
T |
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| Q |
300 |
tttttagatgattttagagcacaaaagcctgctagattttc |
340 |
Q |
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| T |
9125772 |
tttttagaggattatagagcacaaaagcctgccagattttc |
9125732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 203 - 340
Target Start/End: Complemental strand, 9070401 - 9070264
Alignment:
| Q |
203 |
tgcaggttcaattatattggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaggaagatcaagttagaattgataagttt |
302 |
Q |
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| T |
9070401 |
tgcaggttcaattatattgggaatgggcaccattgtatttattaagatttatctgcatttcagagaaaaagaagaagatcaagttagaattgataagttt |
9070302 |
T |
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| Q |
303 |
ttagatgattttagagcacaaaagcctgctagattttc |
340 |
Q |
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| T |
9070301 |
ttagaggattatagagcccaaaagcctgccagattttc |
9070264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 340
Target Start/End: Complemental strand, 8979689 - 8979554
Alignment:
| Q |
205 |
caggttcaattatattggggttggtcatcattgcaattacaaagatttatctacattttaggggaaaaaaggaagatcaagttagaattgataagttttt |
304 |
Q |
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| T |
8979689 |
caggttcaattgttttggggttggttaccattatatttattaagatctatttatattttagaaaaaaagaagaagatcaagttagagttgacaagttttt |
8979590 |
T |
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| Q |
305 |
agatgattttagagcacaaaagcctgctagattttc |
340 |
Q |
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| T |
8979589 |
agaggattatagagcacaacaacctactagattttc |
8979554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 346
Target Start/End: Complemental strand, 8862215 - 8862148
Alignment:
| Q |
279 |
gatcaagttagaattgataagtttttagatgattttagagcacaaaagcctgctagattttcctatgc |
346 |
Q |
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| T |
8862215 |
gatcaaattagagttgataagtttttagaggattatcgagcacaaaaacctactagattttcttatgc |
8862148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 8866090 - 8866030
Alignment:
| Q |
279 |
gatcaagttagaattgataagtttttagatgattttagagcacaaaagcctgctagatttt |
339 |
Q |
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| T |
8866090 |
gatcaaattagagttgataagtttttagaggattatcgagctcaaaaacctactagatttt |
8866030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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