View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_high_14 (Length: 327)
Name: NF5680_high_14
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 4132858 - 4133152
Alignment:
| Q |
19 |
atcaacgtgctgcgccagaatacaagaccgcaaaatagcatagttatacacaccaaaactttatagcgacctttgaattacactccacacagataacacc |
118 |
Q |
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| T |
4132858 |
atcaacatgctgcgccaaaatacaagaccgcaaaatagcatagttatacacaccaaaactttatagcgacctttgaattacactccacacagataacacc |
4132957 |
T |
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| Q |
119 |
aagatgcatttccaatttcttgtatatcccttgttgctaattccacaaatctggaagcaacatatgttgcaacggtttagatagccacaccatcagaccc |
218 |
Q |
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| T |
4132958 |
aagatgcatttccaatttcttgtatatcccttgttgctaattccacaaatctggaagcaacatatgttgcaatggtttagatagccacaccatcagaccc |
4133057 |
T |
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| Q |
219 |
ttccgattcaaattttactgctactaaccaattagttcctcacatcagtccacttccacaacaccttctagctaataacaacttgacactttgat |
313 |
Q |
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| T |
4133058 |
ttccgattcaaattttactgctactaaccaattagttcctcacatcagtccacttccacaacaccttctagctaataacaacttgacactttgat |
4133152 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 43142220 - 43142144
Alignment:
| Q |
71 |
ccaaaactttatagcgacctttgaattacactccacacagataacaccaagatgcatttccaatttcttgtatatcc |
147 |
Q |
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||||||||||| | ||| |||| | | |||| |||||||||| ||||||||| | |||||||||||||||||||| |
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| T |
43142220 |
ccaaaactttacaccgagctttctaattcactacacacagatagtaccaagatgtaattccaatttcttgtatatcc |
43142144 |
T |
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