View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5680_high_20 (Length: 251)

Name: NF5680_high_20
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5680_high_20
NF5680_high_20
[»] chr7 (31 HSPs)
chr7 (1-233)||(48140152-48140384)
chr7 (99-213)||(19302471-19302586)
chr7 (99-183)||(33601349-33601433)
chr7 (125-208)||(48470117-48470201)
chr7 (1-73)||(45806386-45806460)
chr7 (120-210)||(46078167-46078258)
chr7 (1-104)||(420296-420401)
chr7 (141-206)||(5947330-5947396)
chr7 (1-76)||(45806534-45806611)
chr7 (1-104)||(4970822-4970922)
chr7 (99-160)||(21568457-21568518)
chr7 (3-183)||(19022524-19022717)
chr7 (129-206)||(4970707-4970785)
chr7 (141-183)||(18765373-18765415)
chr7 (1-76)||(45338385-45338462)
chr7 (1-42)||(31247621-31247662)
chr7 (1-38)||(31247666-31247703)
chr7 (134-210)||(38138403-38138480)
chr7 (99-202)||(11619077-11619181)
chr7 (10-41)||(8445231-8445262)
chr7 (124-183)||(27863664-27863723)
chr7 (124-210)||(36517649-36517736)
chr7 (129-212)||(44989587-44989670)
chr7 (61-104)||(45790454-45790497)
chr7 (1-35)||(21568728-21568762)
chr7 (7-40)||(5628661-5628694)
chr7 (99-207)||(17944257-17944366)
chr7 (108-165)||(27288003-27288060)
chr7 (4-41)||(45004705-45004742)
chr7 (10-38)||(5276434-5276462)
chr7 (10-38)||(28613631-28613659)
[»] chr3 (34 HSPs)
chr3 (99-198)||(31365111-31365211)
chr3 (125-201)||(584119-584196)
chr3 (1-202)||(20880413-20880627)
chr3 (109-198)||(31365232-31365322)
chr3 (125-210)||(39980802-39980888)
chr3 (125-201)||(24085258-24085335)
chr3 (99-211)||(49556905-49557024)
chr3 (9-76)||(37689177-37689244)
chr3 (1-104)||(39980665-39980770)
chr3 (99-160)||(26911632-26911693)
chr3 (1-75)||(30956684-30956760)
chr3 (1-75)||(30972496-30972572)
chr3 (1-121)||(12862257-12862381)
chr3 (3-76)||(20170461-20170536)
chr3 (125-200)||(21367740-21367816)
chr3 (99-183)||(30443940-30444024)
chr3 (10-75)||(44061081-44061148)
chr3 (131-205)||(47132397-47132470)
chr3 (147-205)||(20170630-20170689)
chr3 (10-41)||(25964387-25964418)
chr3 (10-41)||(30669064-30669095)
chr3 (16-104)||(49034292-49034382)
chr3 (6-101)||(51929389-51929489)
chr3 (1-76)||(5331230-5331306)
chr3 (1-76)||(29520536-29520612)
chr3 (11-41)||(49465757-49465787)
chr3 (125-205)||(22882-22963)
chr3 (128-200)||(18405752-18405825)
chr3 (125-153)||(201664-201692)
chr3 (125-169)||(402495-402539)
chr3 (147-183)||(3845502-3845538)
chr3 (125-204)||(9832672-9832752)
chr3 (129-207)||(42799880-42799960)
chr3 (125-169)||(43046738-43046782)
[»] chr4 (37 HSPs)
chr4 (99-205)||(54426090-54426197)
chr4 (101-202)||(39603090-39603191)
chr4 (10-207)||(21731570-21731778)
chr4 (99-201)||(15173223-15173326)
chr4 (101-206)||(17822780-17822886)
chr4 (1-104)||(54069446-54069551)
chr4 (1-104)||(9760376-9760481)
chr4 (99-208)||(24169310-24169420)
chr4 (1-42)||(43505892-43505933)
chr4 (144-208)||(44797972-44798037)
chr4 (128-203)||(8705017-8705093)
chr4 (141-208)||(18815112-18815180)
chr4 (99-204)||(40830947-40831053)
chr4 (125-206)||(26780-26862)
chr4 (1-76)||(15177259-15177336)
chr4 (1-76)||(31076443-31076520)
chr4 (125-206)||(39691064-39691146)
chr4 (99-203)||(13126494-13126599)
chr4 (114-183)||(22030265-22030334)
chr4 (108-208)||(42403936-42404036)
chr4 (1-104)||(33586984-33587088)
chr4 (4-80)||(41336700-41336777)
chr4 (7-41)||(4471113-4471147)
chr4 (1-80)||(15173353-15173434)
chr4 (1-104)||(50681118-50681223)
chr4 (11-41)||(50745946-50745976)
chr4 (46-104)||(53294143-53294201)
chr4 (10-75)||(8422897-8422962)
chr4 (99-207)||(25904137-25904246)
chr4 (141-209)||(35571543-35571612)
chr4 (6-76)||(44797827-44797899)
chr4 (1-41)||(25904304-25904344)
chr4 (9-41)||(31851398-31851430)
chr4 (10-38)||(34398764-34398792)
chr4 (125-169)||(49940120-49940164)
chr4 (99-167)||(50681044-50681112)
chr4 (99-206)||(55302296-55302404)
[»] chr1 (33 HSPs)
chr1 (108-206)||(2295152-2295251)
chr1 (125-213)||(38247400-38247489)
chr1 (1-104)||(42174793-42174896)
chr1 (99-206)||(43230687-43230793)
chr1 (100-203)||(3233933-3234037)
chr1 (99-205)||(473211-473317)
chr1 (108-202)||(37617384-37617479)
chr1 (132-200)||(2777971-2778040)
chr1 (99-172)||(49938794-49938867)
chr1 (99-164)||(51929497-51929562)
chr1 (99-206)||(14576569-14576677)
chr1 (2-75)||(47432033-47432108)
chr1 (113-207)||(33186367-33186462)
chr1 (115-200)||(5720988-5721074)
chr1 (125-213)||(34795354-34795443)
chr1 (130-210)||(36872806-36872887)
chr1 (141-208)||(2295280-2295348)
chr1 (141-212)||(14385702-14385774)
chr1 (99-183)||(29904798-29904882)
chr1 (141-208)||(34952291-34952359)
chr1 (125-169)||(38001668-38001712)
chr1 (154-208)||(15477655-15477710)
chr1 (46-104)||(3234044-3234102)
chr1 (7-41)||(15581058-15581092)
chr1 (141-183)||(33204333-33204375)
chr1 (129-202)||(50644174-50644248)
chr1 (119-160)||(4445774-4445815)
chr1 (146-210)||(28287893-28287958)
chr1 (1-37)||(1510407-1510443)
chr1 (125-165)||(7941679-7941719)
chr1 (125-169)||(9572054-9572098)
chr1 (4-104)||(17603413-17603518)
chr1 (1-41)||(36872204-36872244)
[»] chr5 (29 HSPs)
chr5 (1-76)||(16458036-16458112)
chr5 (99-204)||(16937800-16937906)
chr5 (125-212)||(34102222-34102310)
chr5 (125-215)||(12433079-12433170)
chr5 (102-207)||(10640003-10640109)
chr5 (1-41)||(42500319-42500359)
chr5 (4-104)||(29925780-29925882)
chr5 (108-205)||(32942650-32942748)
chr5 (127-208)||(43300953-43301035)
chr5 (128-203)||(32941545-32941622)
chr5 (125-203)||(1773024-1773101)
chr5 (125-208)||(7705911-7705995)
chr5 (1-37)||(25461744-25461780)
chr5 (10-41)||(10391298-10391329)
chr5 (10-41)||(11615453-11615484)
chr5 (140-210)||(25461559-25461629)
chr5 (141-183)||(12425662-12425704)
chr5 (99-208)||(12857251-12857361)
chr5 (99-183)||(15015891-15015974)
chr5 (108-166)||(16457935-16457993)
chr5 (141-214)||(32372701-32372775)
chr5 (125-175)||(39248171-39248221)
chr5 (127-181)||(41981644-41981698)
chr5 (141-206)||(42100400-42100466)
chr5 (125-170)||(1464972-1465017)
chr5 (125-201)||(9107163-9107240)
chr5 (141-209)||(34736439-34736508)
chr5 (119-180)||(35445786-35445847)
chr5 (1-37)||(25461853-25461889)
[»] chr2 (36 HSPs)
chr2 (1-189)||(43279460-43279661)
chr2 (58-210)||(30331755-30331910)
chr2 (1-207)||(32592523-32592744)
chr2 (99-212)||(15305721-15305835)
chr2 (125-210)||(42659122-42659208)
chr2 (149-208)||(7928211-7928271)
chr2 (99-183)||(15757597-15757681)
chr2 (4-104)||(20933694-20933796)
chr2 (141-209)||(42868393-42868462)
chr2 (141-212)||(11863990-11864061)
chr2 (140-208)||(3312165-3312234)
chr2 (147-183)||(9174910-9174946)
chr2 (1-41)||(15305593-15305633)
chr2 (119-182)||(32837389-32837453)
chr2 (103-183)||(41851586-41851666)
chr2 (10-71)||(42420356-42420419)
chr2 (10-41)||(5045251-5045282)
chr2 (10-41)||(5998796-5998827)
chr2 (10-41)||(32821754-32821785)
chr2 (1-42)||(26201964-26202006)
chr2 (99-212)||(26202075-26202189)
chr2 (125-206)||(31744371-31744453)
chr2 (99-208)||(41812005-41812115)
chr2 (147-203)||(27317025-27317082)
chr2 (129-205)||(27317456-27317533)
chr2 (141-200)||(33319737-33319795)
chr2 (1-103)||(41241162-41241266)
chr2 (125-205)||(44590097-44590178)
chr2 (141-208)||(4607014-4607082)
chr2 (144-206)||(15370238-15370302)
chr2 (129-173)||(16451195-16451239)
chr2 (13-41)||(18962132-18962160)
chr2 (101-169)||(24100977-24101045)
chr2 (125-180)||(36125434-36125487)
chr2 (125-169)||(36534841-36534885)
chr2 (125-203)||(43529776-43529856)
[»] chr8 (28 HSPs)
chr8 (128-212)||(43717843-43717928)
chr8 (99-205)||(43045641-43045748)
chr8 (101-182)||(28763417-28763498)
chr8 (125-208)||(30251367-30251451)
chr8 (99-209)||(35643900-35644011)
chr8 (114-203)||(36963272-36963362)
chr8 (114-183)||(26771327-26771396)
chr8 (1-42)||(32975996-32976037)
chr8 (126-206)||(38648425-38648506)
chr8 (99-183)||(35749509-35749593)
chr8 (141-207)||(38602416-38602483)
chr8 (99-169)||(10758210-10758280)
chr8 (99-196)||(18133703-18133801)
chr8 (99-199)||(12976259-12976360)
chr8 (126-210)||(6882001-6882083)
chr8 (1-41)||(12497325-12497365)
chr8 (100-207)||(35534527-35534635)
chr8 (144-202)||(9130238-9130297)
chr8 (141-183)||(18591915-18591957)
chr8 (108-201)||(40859703-40859796)
chr8 (141-202)||(44792745-44792807)
chr8 (1-42)||(6525754-6525795)
chr8 (114-210)||(15180602-15180698)
chr8 (140-208)||(29818857-29818926)
chr8 (141-208)||(12496985-12497053)
chr8 (128-184)||(27754479-27754535)
chr8 (99-183)||(31716166-31716250)
chr8 (1-41)||(38353286-38353325)
[»] chr6 (22 HSPs)
chr6 (125-180)||(9559364-9559419)
chr6 (125-209)||(6538587-6538672)
chr6 (99-210)||(848036-848147)
chr6 (111-202)||(4163212-4163304)
chr6 (111-202)||(4224833-4224925)
chr6 (1-76)||(18076132-18076209)
chr6 (129-183)||(33074895-33074949)
chr6 (125-186)||(30536576-30536637)
chr6 (1-42)||(30536651-30536692)
chr6 (7-39)||(3171527-3171559)
chr6 (10-41)||(20370844-20370875)
chr6 (3-42)||(29754172-29754211)
chr6 (11-41)||(2027500-2027530)
chr6 (5-104)||(6016404-6016505)
chr6 (129-202)||(10645304-10645378)
chr6 (10-40)||(33416330-33416360)
chr6 (10-75)||(12631557-12631621)
chr6 (114-206)||(30926581-30926674)
chr6 (126-175)||(34009447-34009496)
chr6 (9-41)||(8147646-8147678)
chr6 (149-208)||(35069525-35069585)
chr6 (1-41)||(35070724-35070764)
[»] scaffold0057 (1 HSPs)
scaffold0057 (125-179)||(24694-24748)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-42)||(207674-207715)
[»] scaffold0060 (1 HSPs)
scaffold0060 (10-41)||(63379-63410)
[»] scaffold0221 (1 HSPs)
scaffold0221 (99-206)||(22278-22386)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 48140152 - 48140384
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataactagattgtttttcaatatgctataagttgtttttctaaataatattggataacttatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48140152 taagcttgcataagctatttttataacaaaagataaaataactagattgtttttcaatatgctataagttgtttttctaattaatattggataacttatg 48140251  T
Q  101 aaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagctatataagccaatccaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||    
T  48140252 aaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacataacttatgccaatagataaactctataagccaatccaaa 48140351  T
Q  201 caggccctaagtatggtttcttattaatgttat 233  Q
    |||||||||||||||||||||||||||||||||    
T  48140352 caggccctaagtatggtttcttattaatgttat 48140384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 19302586 - 19302471
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    ||||||||  |||| |||||||| | |||||||||||||| ||||||||||| | ||||||| |||||||| || |||||||||| | ||||| |||| |    
T  19302586 tgaaaaaagtttatgaaaattgtcataagctgttttcataaattctcccaaatattctcacaaaacttatgtcagtagataagctcaaataagtcaattc 19302487  T
Q  198 aaacaggccctaagta 213  Q
    |||||||  |||||||    
T  19302486 aaacaggttctaagta 19302471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 33601433 - 33601349
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    |||||||| ||||| |||| ||| | ||||||||||||||  |||||  ||| ||||||||| ||||||||||||||||||||||    
T  33601433 tgaaaaaagcttatgaaaagtgtcataagctgttttcataagttctcgaaaagagtctcacaaaacttatgccaatagataagct 33601349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 48470117 - 48470201
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 208  Q
    ||||||||||||||  |||||||||||| ||||| | |||||||| | ||||||||||| | |||||||||||| ||||||||||    
T  48470117 aagctgttttcataagttctcccaaacaatctcataaaacttatgtctatagataagctcaaataagccaatcctaacaggccct 48470201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 45806460 - 45806386
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac--tagattgtttttcaatatgctataagttgtt 73  Q
    ||||||||||||||||||||||||| ||||||||||||||||  || |||||| ||| |  ||||||||||||||    
T  45806460 taagcttgcataagctatttttatagcaaaagataaaataacgttaaattgttcttctaattgctataagttgtt 45806386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 210
Target Start/End: Original strand, 46078167 - 46078258
Alignment:
Q  120 gttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 210  Q
    |||| ||||||||||||||  ||||||| ||||  | |||| |||||||| ||||||||||||| | |||||||||||||| ||||||||||    
T  46078167 gttataagctgttttcataacttctcccgaacaaacccacaaaacttatgtcaatagataagctaaaataagccaatccaaccaggccctaa 46078258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 420296 - 420401
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataa--ctagattgtttttcaatatgctataagttgtttttctaaataatattggataactta 98  Q
    |||||||||||||||||| |||||| |||||||||||||||   |  |||||||||  ||||||||||||||||||   |||   |||||||| ||||||    
T  420296 taagcttgcataagctatgtttatagcaaaagataaaataatgttcaattgtttttgtatatgctataagttgtttccgtaagctatattggagaactta 420395  T
Q  99 tgaaaa 104  Q
    ||||||    
T  420396 tgaaaa 420401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 5947330 - 5947396
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 206  Q
    |||| ||||||||||||| | ||||||| |||||||||||||| | |||||||||||||||||||||    
T  5947330 ttcttccaaacagtctcataaaacttataccaatagataagctcaaataagccaatccaaacaggcc 5947396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 45806611 - 45806534
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac--tagattgtttttcaatatgctataagttgttttt 76  Q
    |||||||||||||||||| |||||| ||||||| ||||||||  || |||||||||| |  |||||||||||||||||    
T  45806611 taagcttgcataagctatgtttatagcaaaagagaaaataacgttaaattgtttttctaattgctataagttgttttt 45806534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 4970922 - 4970822
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataactagattgtttttcaatatgctataagttgtttttctaaataatattggataacttatg 100  Q
    ||||||| |||||||||||| |||| ||||||||||||||   | |||||||||  |||||||||||||| ||||| |||   ||||| || ||||||||    
T  4970922 taagcttacataagctatttctatagcaaaagataaaata---aaattgtttttgtatatgctataagttctttttataagatatattagagaacttatg 4970826  T
Q  101 aaaa 104  Q
    ||||    
T  4970825 aaaa 4970822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 21568518 - 21568457
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcaca 160  Q
    |||||| | ||||| |||||||||| ||||||||||||||  ||||||||||||||||||||    
T  21568518 tgaaaagagcttatgaaaattgttataagctgttttcataagttctcccaaacagtctcaca 21568457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 19022717 - 19022524
Alignment:
Q  3 agcttgcataagctatttttataacaaaagataaaataact--agattgtttttcaatatgctataagttgtttttctaaataatattggataacttatg 100  Q
    ||||||| |||||||||| ||| | ||||||||||| ||||  | ||||||||   | |||||||||||||||||| |||   |||||||| ||||||||    
T  19022717 agcttgcttaagctatttctatcataaaagataaaagaactttaaattgttttaataaatgctataagttgtttttataagctatattggagaacttatg 19022618  T
Q  101 aaaaaat-----------cttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    |||| |            ||||| |||||||| | ||| |||||||||| ||||||||||||| ||||||| |||| ||| || ||||||||||    
T  19022617 aaaataagttgaagacaacttatgaaaattgtcataagttgttttcataaattctcccaaacaatctcacaaaactcatgtcagtagataagct 19022524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 4970785 - 4970707
Alignment:
Q  129 tgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 206  Q
    ||||||||||  ||||||||||||||||||||  ||||||| ||  ||||||||| | ||||| |||||||||||||||    
T  4970785 tgttttcataagttctcccaaacagtctcacaagacttatgtcacgagataagctcaaataagtcaatccaaacaggcc 4970707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 18765373 - 18765415
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  18765373 ttctcccaaacagtctcacaaaacttatgtcaatagataagct 18765415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 45338385 - 45338462
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac--tagattgtttttcaatatgctataagttgttttt 76  Q
    |||||||||||||| |||||| ||| ||||| ||||||||||  || |||||||||  ||||||| ||||||||||||    
T  45338385 taagcttgcataagttattttcatagcaaaaaataaaataaccttaaattgtttttgtatatgctgtaagttgttttt 45338462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31247662 - 31247621
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac 42  Q
    ||||||||||||||||||||||||| |||||||| |||||||    
T  31247662 taagcttgcataagctatttttatagcaaaagatgaaataac 31247621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31247703 - 31247666
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaa 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  31247703 taagcttgcataagctatttttatagcaaaagataaaa 31247666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 38138480 - 38138403
Alignment:
Q  134 tcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 210  Q
    ||||| |||||| ||  ||||||||||||| |||| |||||||||||||| | ||||| || ||||||||||||||||    
T  38138480 tcataaattctctcactcagtctcacagaatttattccaatagataagctcaaataagtcattccaaacaggccctaa 38138403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 202
Target Start/End: Complemental strand, 11619181 - 11619077
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||||| |||||||| | ||| |||||||||| |||||||||| | || |||   | |||||| || |||||||||| | ||||||||||||    
T  11619181 tgaaaaaagcttatgaaaattgtcataagttgttttcataaattctcccaatctgtttcatgaagcttatgtcagtagataagctcaaataagccaatcc 11619082  T
Q  198 aaaca 202  Q
    |||||    
T  11619081 aaaca 11619077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 8445231 - 8445262
Alignment:
Q  10 ataagctatttttataacaaaagataaaataa 41  Q
    ||||||||||||||||||||||||||||||||    
T  8445231 ataagctatttttataacaaaagataaaataa 8445262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 27863723 - 27863664
Alignment:
Q  124 caagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    |||||||||||||||  ||||| |||| ||||||||| ||||||||||| | ||||||||    
T  27863723 caagctgttttcataagttctctcaaatagtctcacaaaacttatgccagtggataagct 27863664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 36517649 - 36517736
Alignment:
Q  124 caagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 210  Q
    ||||||||||| |||  |||||||||||||||| | | ||||||||||| ||| |||||| | ||||   ||||||||||||||||||    
T  36517649 caagctgttttaataagttctcccaaacagtcttagaaaacttatgccagtagctaagctcaaataaatgaatccaaacaggccctaa 36517736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 44989670 - 44989587
Alignment:
Q  129 tgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagctatataagccaatccaaacaggccctaagt 212  Q
    ||||||||||  || ||||||||||||||||| ||||||||| |   ||||| ||  |||||||||| |||||| |||||||||    
T  44989670 tgttttcataagttttcccaaacagtctcacaaaacttatgctaccggataaactcaataagccaattcaaacatgccctaagt 44989587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 45790497 - 45790454
Alignment:
Q  61 gctataagttgtttttctaaataatattggataacttatgaaaa 104  Q
    |||||||||||||||| ||||  |||||||||||||||||||||    
T  45790497 gctataagttgtttttataaactatattggataacttatgaaaa 45790454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 21568762 - 21568728
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagata 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  21568762 taagcttgcataagctatttttatagcaaaagata 21568728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 5628694 - 5628661
Alignment:
Q  7 tgcataagctatttttataacaaaagataaaata 40  Q
    |||||||||||||||||||||||| |||||||||    
T  5628694 tgcataagctatttttataacaaatgataaaata 5628661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 207
Target Start/End: Complemental strand, 17944366 - 17944257
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagc-tatataagccaatcc 197  Q
    |||||||| | ||| |||| ||| | |||||||||| |||  || ||  ||||||||||||| | ||||||||| ||||||||| || ||||| || |||    
T  17944366 tgaaaaaagcatatgaaaagtgtcataagctgtttttataagttgtctgaaacagtctcacaaagcttatgccagtagataagcttaaataagtcactcc 17944267  T
Q  198 aaacaggccc 207  Q
    ||||||||||    
T  17944266 aaacaggccc 17944257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 27288003 - 27288060
Alignment:
Q  108 cttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaact 165  Q
    ||||| |||||||||| ||||||||||||||  |||| ||||| ||||||||| ||||    
T  27288003 cttatgaaaattgttataagctgttttcataagttcttccaaatagtctcacaaaact 27288060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 45004705 - 45004742
Alignment:
Q  4 gcttgcataagctatttttataacaaaagataaaataa 41  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  45004705 gcttgcataaactatttttatagcaaaagataaaataa 45004742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 5276434 - 5276462
Alignment:
Q  10 ataagctatttttataacaaaagataaaa 38  Q
    |||||||||||||||||||||||||||||    
T  5276434 ataagctatttttataacaaaagataaaa 5276462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 28613659 - 28613631
Alignment:
Q  10 ataagctatttttataacaaaagataaaa 38  Q
    |||||||||||||||||||||||||||||    
T  28613659 ataagctatttttataacaaaagataaaa 28613631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 31365211 - 31365111
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||||| |||||||| | |||||| |||||||  |||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||    
T  31365211 tgaaaaaagcttatgaaaattgtcataagctgctttcataagttctcccaaacagtctcacaaaacttatgccaatagataagctcaaataagccaatcc 31365112  T
Q  198 a 198  Q
    |    
T  31365111 a 31365111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 584119 - 584196
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaac 201  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||| | |||||||||| | ||||| ||||||||||    
T  584119 aagctgttttcataaattctccaaaacagtctcacagaacttatgctagtagataagctcaaataagtcaatccaaac 584196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 20880413 - 20880627
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataact-agattgtttttcaatatgctataagttgtttttctaaataatattggataacttat 99  Q
    ||||||| ||||||||||||||||| |||| ||||||| || | | |||||||||  |||||||||||  |||||||  ||   |||||||| |||||||    
T  20880413 taagcttacataagctatttttatagcaaatgataaaacaagttaaattgtttttgtatatgctataaactgtttttaaaagctatattggagaacttat 20880512  T
Q  100 gaaaa-----------aatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atat 187  Q
    |||||           || ||||| |||||||| | ||||||||||||||  |||||||||| ||||| |   ||||||||| | |||||||||| | ||    
T  20880513 gaaaataagctcaaaaaagcttatgaaaattgtcataagctgttttcataggttctcccaaatagtctaaggaaacttatgcaagtagataagctcaaat 20880612  T
Q  188 aagccaatccaaaca 202  Q
    |||||||||||||||    
T  20880613 aagccaatccaaaca 20880627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 31365322 - 31365232
Alignment:
Q  109 ttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcca 198  Q
    |||| |||||||| | ||||||| ||||||  |||||||||||||| ||||| || |||||||||||||||| || | |||||||||||||    
T  31365322 ttatgaaaattgtcataagctgtattcataagttctcccaaacagtgtcacaaaaattatgccaatagataaactcaaataagccaatcca 31365232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 210
Target Start/End: Original strand, 39980802 - 39980888
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 210  Q
    ||||||||||||||  |||||  ||||||||||||| ||||||||| | |||||||||| | | |||||||||||||||| ||||||    
T  39980802 aagctgttttcataagttctcttaaacagtctcacaaaacttatgctagtagataagctcaaacaagccaatccaaacagaccctaa 39980888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 24085335 - 24085258
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaac 201  Q
    ||||||||||||||  |||||| || |||||||||| ||||||||||  |||||||||| | ||||||||||||||||    
T  24085335 aagctgttttcataagttctccaaaccagtctcacaaaacttatgccggtagataagctcaaataagccaatccaaac 24085258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 49556905 - 49557024
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaaca------gtctcacagaacttatgccaatagataagct-atataagc 191  Q
    |||||||| ||||| |||||||| | |||||||||||||| ||||||  ||| |      |||||||| ||||||||||| | |||||||| | ||||||    
T  49556905 tgaaaaaagcttatgaaaattgtcataagctgttttcataaattctctgaaagactaagagtctcacaaaacttatgccacttgataagctcagataagc 49557004  T
Q  192 caatccaaacaggccctaag 211  Q
    ||||||||| ||||||||||    
T  49557005 caatccaaataggccctaag 49557024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 37689177 - 37689244
Alignment:
Q  9 cataagctatttttataacaaaagataaaataactagattgtttttcaatatgctataagttgttttt 76  Q
    |||||||||||| |||| |||||||||||||||  | |||||||||  |||||||||| |||||||||    
T  37689177 cataagctatttctatagcaaaagataaaataaagaaattgtttttgtatatgctataggttgttttt 37689244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 39980665 - 39980770
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac--tagattgtttttcaatatgctataagttgtttttctaaataatattggataactta 98  Q
    |||| |||||| |||| |||||||| || || ||| ||||||  || ||||||||| || |||||||||||||||||| |||   |||||||| ||||||    
T  39980665 taagtttgcattagctttttttatagcagaacatacaataacgttaaattgtttttgaacatgctataagttgtttttataagctatattggagaactta 39980764  T
Q  99 tgaaaa 104  Q
    ||||||    
T  39980765 tgaaaa 39980770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 26911632 - 26911693
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcaca 160  Q
    |||||||| ||||| |||||||| | |||||||||||||| ||| |||||||| ||||||||    
T  26911632 tgaaaaaaacttatgaaaattgtcataagctgttttcatatattatcccaaacggtctcaca 26911693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 30956760 - 30956684
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataa--ctagattgtttttcaatatgctataagttgtttt 75  Q
    ||||||| |||||||||||| |||| |||||||||||||||   || |||||||||  ||| |||||||||||||||    
T  30956760 taagcttacataagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgtttt 30956684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 30972572 - 30972496
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataa--ctagattgtttttcaatatgctataagttgtttt 75  Q
    ||||||| |||||||||||| |||| |||||||||||||||   || |||||||||  ||| |||||||||||||||    
T  30972572 taagcttacataagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgtttt 30972496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 12862381 - 12862257
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaat--aactagattgtttttcaatatgctataagttgtttttctaaataatattggataactta 98  Q
    ||||||||||||| ||||||||||| |||||||||||||  |  || |||| ||||  |||||||||||||||||||  |||   |||||||| ||||||    
T  12862381 taagcttgcataatctatttttatagcaaaagataaaatagatttaaattg-ttttgtatatgctataagttgttttcataagctatattggagaactta 12862283  T
Q  99 ---tgaaaaaatcttataaaaattgt 121  Q
       |||||||| ||||| ||||||||    
T  12862282 tgttgaaaaaagcttatgaaaattgt 12862257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 20170461 - 20170536
Alignment:
Q  3 agcttgcataagctatttttataacaaaagataaaataa--ctagattgtttttcaatatgctataagttgttttt 76  Q
    |||||||| ||||||||||||   |||||||||||||||   || |||||||||  ||||||||||||||||||||    
T  20170461 agcttgcacaagctatttttactgcaaaagataaaataatgttaaattgtttttgtatatgctataagttgttttt 20170536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 21367740 - 21367816
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaa 200  Q
    ||||||||||||||  ||||||||||||||| |||| |||||||||   ||||||| || | |||||||||||||||    
T  21367740 aagctgttttcataagttctcccaaacagtcccacaaaacttatgctggtagataatctcaaataagccaatccaaa 21367816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 30443940 - 30444024
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    |||||||| ||| | |||||||| | ||||||||||||||   ||| ||||||||||||||  || |||||||| ||||||||||    
T  30443940 tgaaaaaagcttgtgaaaattgtcataagctgttttcataagctctaccaaacagtctcaccaaatttatgccagtagataagct 30444024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 44061148 - 44061081
Alignment:
Q  10 ataagctatttttataacaaaagataaaataa--ctagattgtttttcaatatgctataagttgtttt 75  Q
    ||||||||||| |||| |||||||||||||||   || |||||||||| ||| |||||||||||||||    
T  44061148 ataagctatttctatagcaaaagataaaataaggttaaattgtttttctataagctataagttgtttt 44061081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 47132397 - 47132470
Alignment:
Q  131 ttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggc 205  Q
    ||||||||  |||||| ||||||||||||| ||||  ||||| |||||||||| | ||||||||||||||||||||    
T  47132397 ttttcataagttctccaaaacagtctcacaaaact--tgccagtagataagctcaaataagccaatccaaacaggc 47132470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 20170689 - 20170630
Alignment:
Q  147 caaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggc 205  Q
    |||||||||||||  |||||||| || |||||||||| | ||||||||||||||||||||    
T  20170689 caaacagtctcactaaacttatgtcactagataagctcaaataagccaatccaaacaggc 20170630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 25964387 - 25964418
Alignment:
Q  10 ataagctatttttataacaaaagataaaataa 41  Q
    ||||||||||||||||||||||||||||||||    
T  25964387 ataagctatttttataacaaaagataaaataa 25964418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 30669095 - 30669064
Alignment:
Q  10 ataagctatttttataacaaaagataaaataa 41  Q
    ||||||||||||||||||||||||||||||||    
T  30669095 ataagctatttttataacaaaagataaaataa 30669064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 49034382 - 49034292
Alignment:
Q  16 tatttttataacaaaagataaaataac--tagattgtttttcaatatgctataagttgtttttctaaataatattggataacttatgaaaa 104  Q
    |||||||||| |||||||||||||| |  || ||||||| |  |||||||||||||||||||| |||   |||||||| ||||| ||||||    
T  49034382 tatttttatagcaaaagataaaataccgttaaattgtttgtgcatatgctataagttgtttttataagctatattggagaacttctgaaaa 49034292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 51929489 - 51929389
Alignment:
Q  6 ttgcataagctatttttataacaaaagataaaata--actagattgtttttc---aatatgctataagttgtttttctaaataatattggataacttatg 100  Q
    ||||||||| |||||||||| ||||||||||||||  | || ||||||||||    |||||||||||||| |||||||||   |||||  ||||||||||    
T  51929489 ttgcataagatatttttatagcaaaagataaaatagcattaaattgtttttctattatatgctataagttttttttctaagctatattttataacttatg 51929390  T
Q  101 a 101  Q
    |    
T  51929389 a 51929389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 5331230 - 5331306
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac--tagattgtttttcaatatgctataagttgttttt 76  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||  || |||||| ||| |  |||||||||||||||||    
T  5331230 taagcttgcataagcta-ttttatagcaaaagagaaaataacgttaaattgttcttctaattgctataagttgttttt 5331306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 29520612 - 29520536
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac--tagattgtttttcaatatgctataagttgttttt 76  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||  || |||||| ||| |  |||||||||||||||||    
T  29520612 taagcttgcataagcta-ttttatagcaaaagagaaaataacgttaaattgttcttctaattgctataagttgttttt 29520536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Complemental strand, 49465787 - 49465757
Alignment:
Q  11 taagctatttttataacaaaagataaaataa 41  Q
    |||||||||||||||||||||||||||||||    
T  49465787 taagctatttttataacaaaagataaaataa 49465757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 22963 - 22882
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggc 205  Q
    ||||||||||||||  |||||| ||||| ||||||| ||||||||||| |||| ||| | | |||||||||||  |||||||    
T  22963 aagctgttttcataacttctcctaaacaatctcacaaaacttatgccagtagacaagttcaaataagccaatctcaacaggc 22882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 18405825 - 18405752
Alignment:
Q  128 ctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaa 200  Q
    |||||||||||  ||||  |||||||||||||| |||||||| || |||||||||| | |||| ||||||||||    
T  18405825 ctgttttcataagttcttgcaaacagtctcacaaaacttatgtcagtagataagctcaaataaaccaatccaaa 18405752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 153
Target Start/End: Original strand, 201664 - 201692
Alignment:
Q  125 aagctgttttcatacattctcccaaacag 153  Q
    |||||||||||||||||||||||||||||    
T  201664 aagctgttttcatacattctcccaaacag 201692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 402539 - 402495
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatg 169  Q
    ||||||||||||||| ||||||||||||||||  || ||||||||    
T  402539 aagctgttttcatacgttctcccaaacagtcttgcaaaacttatg 402495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 3845538 - 3845502
Alignment:
Q  147 caaacagtctcacagaacttatgccaatagataagct 183  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  3845538 caaacagtctcacaaaacttatgccagtagataagct 3845502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 9832752 - 9832672
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacagg 204  Q
    |||||||||||| |  |||||||||||||| | ||| |||||||| ||||| ||||||| | ||||| ||||| |||||||    
T  9832752 aagctgttttcaaaagttctcccaaacagtttgacaaaacttatgtcaataaataagctcaaataagtcaatctaaacagg 9832672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 42799960 - 42799880
Alignment:
Q  129 tgttttcatacattctcccaaacagtctcacagaacttatgccaatagataa-gct-atataagccaatccaaacaggccc 207  Q
    ||||||||||  |||||||||| ||| ||||| ||| |||| || ||||||| ||| | ||||||||||||||||||||||    
T  42799960 tgttttcataagttctcccaaagagtttcacaaaacatatgtcagtagataaagctcaaataagccaatccaaacaggccc 42799880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 43046738 - 43046782
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatg 169  Q
    ||||||||||||||  |||||||||||||||||||| ||| ||||    
T  43046738 aagctgttttcataagttctcccaaacagtctcacaaaacatatg 43046782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 54426090 - 54426197
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||||| |||||||| | ||||||||||| ||  ||||||||| |||||||||| ||||||||||| |||||||||| | ||||||||||||    
T  54426090 tgaaaaaagcttatgaaaattgtcataagctgttttcctaagttctcccaagcagtctcacaaaacttatgccagtagataagctcaaataagccaatcc 54426189  T
Q  198 aaacaggc 205  Q
    ||||||||    
T  54426190 aaacaggc 54426197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 39603191 - 39603090
Alignment:
Q  101 aaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaa 199  Q
    |||||| |||||||||||||| | ||||||||||| ||  |||||||||||||||||||| ||||||| |||||||| ||||| | ||||||||||||||    
T  39603191 aaaaaagcttataaaaattgtcataagctgttttcctaagttctcccaaacagtctcacaaaacttataccaataga-aagctcaaataagccaatccaa 39603093  T
Q  200 aca 202  Q
    |||    
T  39603092 aca 39603090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 21731778 - 21731570
Alignment:
Q  10 ataagctatttttataacaaaagataaaataactagattgtttttcaatatgctataagttgtttttctaaataatattggataacttatgaaa------ 103  Q
    |||||||||||||||| ||||||||||| |||| |  ||||||||  || ||||||||||||||||| |||   |||||||| || ||||||||          
T  21731778 ataagctatttttatagcaaaagataaagtaac-attttgtttttgtatgtgctataagttgtttttataagctatattggagaatttatgaaagtaagt 21731680  T
Q  104 -----aaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
         |||  |||| |||||||| | ||||||||||||||  |||||||||||| ||||||| |||||||| || |||||| ||| | |||| |||||||    
T  21731679 tgaaaaaagtttatgaaaattgtgataagctgttttcataagttctcccaaacaatctcacaaaacttatgtcagtagatatgctcaaataaaccaatcc 21731580  T
Q  198 aaacaggccc 207  Q
    ||||||||||    
T  21731579 aaacaggccc 21731570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 201
Target Start/End: Complemental strand, 15173326 - 15173223
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||||| |||||||| | ||||| |||||||| | ||||||||||||||||||| |||||||| || |||||||| | | ||||| ||||||    
T  15173326 tgaaaaaaacttatgaaaattgtcataagctattttcataaagtctcccaaacagtctcacaaaacttatgtcagtagataagttcaaataagtcaatcc 15173227  T
Q  198 aaac 201  Q
    ||||    
T  15173226 aaac 15173223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 17822886 - 17822780
Alignment:
Q  101 aaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaa 199  Q
    |||||| ||||| |||| ||| | ||||||||||||||  |||||| ||| |||||||||||||||||| || |||||||||| | |||||  |||||||    
T  17822886 aaaaaagcttatgaaaaatgtcataagctgttttcatatgttctcctaaatagtctcacagaacttatgtcagtagataagctcaaataagttaatccaa 17822787  T
Q  200 acaggcc 206  Q
    |||||||    
T  17822786 acaggcc 17822780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 54069551 - 54069446
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataa--ctagattgtttttcaatatgctataagttgtttttctaaataatattggataactta 98  Q
    |||||||||||| |||||||||||| |||||||||||||||   || |||||||||  ||||||||||| |||||||| ||| | |||||| | ||| ||    
T  54069551 taagcttgcatatgctatttttatatcaaaagataaaataatgttaaattgtttttgtatatgctataatttgtttttataagttatattgaagaacata 54069452  T
Q  99 tgaaaa 104  Q
    ||||||    
T  54069451 tgaaaa 54069446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 9760376 - 9760481
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac--tagattgtttttcaatatgctataagttgtttttctaaataatattggataactta 98  Q
    ||||||| |||||| |||||||||   ||||||||||||||   || ||| ||||| ||||||||||||||||||||| |||   |||||||| ||||||    
T  9760376 taagctttcataagttatttttattgaaaaagataaaataaagttaaattcttttttaatatgctataagttgtttttataagctatattggagaactta 9760475  T
Q  99 tgaaaa 104  Q
    ||||||    
T  9760476 tgaaaa 9760481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 24169310 - 24169420
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagctat-ataagccaatcc 197  Q
    |||||||||||||| |||| ||| | ||||| |||| | |  ||||| |||| ||||||||| ||||||||||| ||||||| || | ||||||||||||    
T  24169310 tgaaaaaatcttatgaaaaatgtcataagctatttttaaaagttctctcaaatagtctcacaaaacttatgccagtagataaactctaataagccaatcc 24169409  T
Q  198 aaacaggccct 208  Q
    ||||| |||||    
T  24169410 aaacaagccct 24169420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43505892 - 43505933
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac 42  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  43505892 taagcttgcataagctatttttatagcaaaagataaaataac 43505933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 44797972 - 44798037
Alignment:
Q  144 tcccaaacagtctcacagaacttatgccaatagataagc-tatataagccaatccaaacaggccct 208  Q
    ||||||||||||||||| |||||||| || ||||||||| || || ||||||||||||||||||||    
T  44797972 tcccaaacagtctcacaaaacttatgtcagtagataagcttaaatcagccaatccaaacaggccct 44798037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 8705017 - 8705093
Alignment:
Q  128 ctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacag 203  Q
    ||||||| |||  ||||||||| |||||||||| |||||||| ||||||||||||| | || |||||||||||||||    
T  8705017 ctgtttttataagttctcccaatcagtctcacaaaacttatgtcaatagataagctcaaatgagccaatccaaacag 8705093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 18815112 - 18815180
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 208  Q
    ||||| |||||||||||||| ||||||||| | ||| |||||| | |||||||||||||||||||||||    
T  18815112 ttctctcaaacagtctcacaaaacttatgctagtaggtaagctcaaataagccaatccaaacaggccct 18815180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 40831053 - 40830947
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttt-tcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatc 196  Q
    |||||||| ||||||||| ||||   ||||||||| |||||  |||| || |||||||||||| |||||||| ||||||||||||| | || ||||||||    
T  40831053 tgaaaaaagcttataaaagttgtcgtaagctgtttctcataatttcttccgaacagtctcacaaaacttatg-caatagataagctcaaattagccaatc 40830955  T
Q  197 caaacagg 204  Q
    ||||||||    
T  40830954 caaacagg 40830947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 26862 - 26780
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 206  Q
    ||||||||||||||  |||||  ||||||||| ||| | ||||||||| | |||||||| | |||||||||||||||||||||    
T  26862 aagctgttttcataatttctcggaaacagtctaacaaagcttatgccagttgataagctcaaataagccaatccaaacaggcc 26780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 15177336 - 15177259
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac--tagattgtttttcaatatgctataagttgttttt 76  Q
    ||||||||||||||||||||| ||| | ||||||||||||||  || |||||| ||| || |||||||||| ||||||    
T  15177336 taagcttgcataagctattttaatagctaaagataaaataacgttaaattgttcttctatgtgctataagtggttttt 15177259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 31076520 - 31076443
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataa--ctagattgtttttcaatatgctataagttgttttt 76  Q
    ||||||||||||||||||||||| | |||||||||||||||   || | |||||||  ||||||||||| ||||||||    
T  31076520 taagcttgcataagctatttttagagcaaaagataaaataagtttaaactgtttttgtatatgctataaattgttttt 31076443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 39691146 - 39691064
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 206  Q
    ||||||||  |||| |||||| |||||||||||||| ||||||||| | |||||||||| | ||||| |||| ||||||||||    
T  39691146 aagctgttcccataaattctctcaaacagtctcacaaaacttatgctagtagataagctcaaataagtcaattcaaacaggcc 39691064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 13126599 - 13126494
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||||| | || ||| | |||||||||| |||  |||| ||||||||||||||| ||||||||  | ||| |||||| | ||||||||||||    
T  13126599 tgaaaaaagcttatgataaatgtcataagctgtttttataagttcttccaaacagtctcacaaaacttatgttagtaggtaagctaaaataagccaatcc 13126500  T
Q  198 aaacag 203  Q
    ||||||    
T  13126499 aaacag 13126494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 22030265 - 22030334
Alignment:
Q  114 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    |||||||| | ||||||||||||||  |||||||||| || |||||| ||||||||| |||||| |||||    
T  22030265 aaaattgtcataagctgttttcataagttctcccaaataggctcacaaaacttatgctaatagacaagct 22030334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 42404036 - 42403936
Alignment:
Q  108 cttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 206  Q
    ||||| |||||||| | |||||||||||| | ||||||||||| || | |||| |||||||| || | |||||||| | ||||| |||||||||||||||    
T  42404036 cttatgaaaattgtcataagctgttttcagaaattctcccaaatag-cacacaaaacttatgtcagttgataagctcaaataagtcaatccaaacaggcc 42403938  T
Q  207 ct 208  Q
    ||    
T  42403937 ct 42403936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 33587088 - 33586984
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac-tagattgtttttcaatatgctataagttgtttttctaaataatattggataacttat 99  Q
    ||||||||||||||||||||||||| | |||||||||| ||| | ||  ||||||  ||||| |||| ||||||||| |||   |||| ||| |||||||    
T  33587088 taagcttgcataagctatttttatagcgaaagataaaacaacgttgaacgtttttgtatatgttataggttgtttttataagctatatcggagaacttat 33586989  T
Q  100 gaaaa 104  Q
    |||||    
T  33586988 gaaaa 33586984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 41336700 - 41336777
Alignment:
Q  4 gcttgcataagctatttttataacaaaagataaaataa--ctagattgtttttcaatatgctataagttgtttttctaa 80  Q
    |||||||||||||||||||||| | |||||||||||||   || |||||||||  ||||| ||||| ||||||||||||    
T  41336700 gcttgcataagctatttttatagc-aaagataaaataaagttaaattgtttttgtatatgttataaattgtttttctaa 41336777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 4471113 - 4471147
Alignment:
Q  7 tgcataagctatttttataacaaaagataaaataa 41  Q
    ||||||| |||||||||||||||||||||||||||    
T  4471113 tgcataaactatttttataacaaaagataaaataa 4471147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 15173434 - 15173353
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac--tagattgtttttcaatatgctataagttgtttttctaa 80  Q
    ||||||||||||||||| ||| ||| | ||||||||||||||  || |||||| ||| || |||||||||| |||||| |||    
T  15173434 taagcttgcataagctactttaatagctaaagataaaataacgataaattgttcttctatgtgctataagtggtttttataa 15173353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 50681223 - 50681118
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac--tagattgtttttcaatatgctataagttgtttttctaaataatattggataactta 98  Q
    ||||||| || ||||||||||||||  | ||||||||||||   || |||||||||  |||||||||||||||||| | |||   |||||||| || |||    
T  50681223 taagcttacaaaagctatttttataggataagataaaataatgttaaattgtttttgtatatgctataagttgtttatataagctatattggagaaatta 50681124  T
Q  99 tgaaaa 104  Q
    ||||||    
T  50681123 tgaaaa 50681118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 50745946 - 50745976
Alignment:
Q  11 taagctatttttataacaaaagataaaataa 41  Q
    |||||||||||||||||||||||||||||||    
T  50745946 taagctatttttataacaaaagataaaataa 50745976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 53294201 - 53294143
Alignment:
Q  46 attgtttttcaatatgctataagttgtttttctaaataatattggataacttatgaaaa 104  Q
    |||||||||  |||||||||||||||||||| ||||  ||||| || ||||||||||||    
T  53294201 attgtttttgtatatgctataagttgtttttataaactatattagagaacttatgaaaa 53294143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 8422962 - 8422897
Alignment:
Q  10 ataagctatttttataacaaaagataaaataactagattgtttttcaatatgctataagttgtttt 75  Q
    ||||||||||||||||| ||||||||||||||    ||||||||   ||| |||||||||||||||    
T  8422962 ataagctatttttataaaaaaagataaaataaagtcattgttttcatataagctataagttgtttt 8422897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 207
Target Start/End: Complemental strand, 25904246 - 25904137
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||||| |||| ||  | ||||||||||||||   ||||||||||||||||||| || ||||| || | |||||||| | ||||| ||| |     
T  25904246 tgaaaaaagcttatgaaaaatggcataagctgttttcataagctctcccaaacagtctcacaaaatttatgtcattggataagctcaaataagtcaacca 25904147  T
Q  198 aaacaggccc 207  Q
    ||||||||||    
T  25904146 aaacaggccc 25904137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 35571612 - 35571543
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcccta 209  Q
    |||||||||||  || |||| ||||||||| | |||||||||| | |||||||||||||||||| |||||    
T  35571612 ttctcccaaactatcccacaaaacttatgctagtagataagctcaaataagccaatccaaacagacccta 35571543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 44797827 - 44797899
Alignment:
Q  6 ttgcataagctatttttataacaaaagataaaataac--tagattgtttttcaatatgctataagttgttttt 76  Q
    |||||||||||||||||||| |||||||||||| |||  || |||| ||||   || ||||||||||||||||    
T  44797827 ttgcataagctatttttatagcaaaagataaaacaacgttaaattgattttgtgtacgctataagttgttttt 44797899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25904344 - 25904304
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataa 41  Q
    ||||||| ||||||||||||||| | |||||||||||||||    
T  25904344 taagcttacataagctatttttacagcaaaagataaaataa 25904304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 31851398 - 31851430
Alignment:
Q  9 cataagctatttttataacaaaagataaaataa 41  Q
    |||||||||||||||||||||| ||||||||||    
T  31851398 cataagctatttttataacaaatgataaaataa 31851430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 34398792 - 34398764
Alignment:
Q  10 ataagctatttttataacaaaagataaaa 38  Q
    |||||||||||||||||||||||||||||    
T  34398792 ataagctatttttataacaaaagataaaa 34398764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 49940164 - 49940120
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatg 169  Q
    ||||||||||||||  ||||| |||||||||||||| ||||||||    
T  49940164 aagctgttttcataagttctctcaaacagtctcacaaaacttatg 49940120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 50681112 - 50681044
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaactta 167  Q
    |||||||| ||||| |||||||| |  | |||||||||||  ||||| |||||||||||||| ||||||    
T  50681112 tgaaaaaagcttatgaaaattgtcattaactgttttcataagttctctcaaacagtctcacaaaactta 50681044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 55302296 - 55302404
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||||  |||||||| | |||||||||  |||  || |||  ||||| |||||| ||||||||||| |||||||||| | |||||| |||||    
T  55302296 tgaaaaaagcttacgaaaattgtcataagctgtttctataagttttccggaacaggctcacaaaacttatgccattagataagctaaaataagcaaatcc 55302395  T
Q  198 aaacaggcc 206  Q
     ||||||||    
T  55302396 taacaggcc 55302404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 2295152 - 2295251
Alignment:
Q  108 cttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 206  Q
    ||||| |||||||| | ||||||||||||||  |||||||||||||||||||| ||||||||||| |||||||||| | |||||||||| ||||||||||    
T  2295152 cttatgaaaattgtcataagctgttttcataagttctcccaaacagtctcacaaaacttatgccagtagataagctcaaataagccaattcaaacaggcc 2295251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 38247400 - 38247489
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaagta 213  Q
    ||||||||||||||  ||||||||||||||  |||| ||||||||||| |||||||| | | |||| |||||||||||||||||||||||    
T  38247400 aagctgttttcataagttctcccaaacagtgacacaaaacttatgccagtagataagttcaaataacccaatccaaacaggccctaagta 38247489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 42174793 - 42174896
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataactagattgtttttcaatatgctataagttgtttttctaaataatattggataacttatg 100  Q
    |||||||||||| |||||||||||| ||||||||||| |||    |  ||||||  |||||||||||||||||||| ||| | |||||||| ||||||||    
T  42174793 taagcttgcataggctatttttatatcaaaagataaagtaatgttaaagtttttgtatatgctataagttgtttttataagttatattggagaacttatg 42174892  T
Q  101 aaaa 104  Q
    ||||    
T  42174893 aaaa 42174896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 43230793 - 43230687
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| |||||||||| |||  ||||||||||||||| ||||||| ||||| ||||  | ||||||||||| |||| ||||| | ||| ||||||||    
T  43230793 tgaaaaaagcttataaaaactgt--caagctgttttcataaattctcctaaacaatctcgtaaaacttatgccagtagagaagctcaaatatgccaatcc 43230696  T
Q  198 aaacaggcc 206  Q
    |||||||||    
T  43230695 aaacaggcc 43230687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 3234037 - 3233933
Alignment:
Q  100 gaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcca 198  Q
    ||||||| ||||| |||| ||||| ||| ||||||||||  ||||||| |||||||||||| |||||| | || |||||||||| | ||||| |||||||    
T  3234037 gaaaaaaacttatgaaaactgttataagttgttttcataagttctccctaacagtctcacaaaacttacggcactagataagctcaaataagtcaatcca 3233938  T
Q  199 aacag 203  Q
    |||||    
T  3233937 aacag 3233933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 473211 - 473317
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||||| |||||||| | ||||| ||||||||  ||||||||||  || ||||||||||||||||| |||||| ||| | |||||||||||     
T  473211 tgaaaaaagcttatgaaaattgt-ataagcttttttcataagttctcccaaaatgtttcacagaacttatgccagtagataggctcaaataagccaatct 473309  T
Q  198 aaacaggc 205  Q
    ||||||||    
T  473310 aaacaggc 473317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 202
Target Start/End: Complemental strand, 37617479 - 37617384
Alignment:
Q  108 cttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaaca 202  Q
    ||||| ||| |||| | |||||||||||||| |||||| |||||||||||||| |||||| | |||||||||| || | ||||| |||||||||||    
T  37617479 cttatgaaatttgtcaaaagctgttttcataaattctcgcaaacagtctcacaaaacttacggcaatagataaactcaaataagtcaatccaaaca 37617384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 2777971 - 2778040
Alignment:
Q  132 tttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaa 200  Q
    |||||||  |||||| ||||||||||||| ||||||||| |||||||||||| | |||||||||||||||    
T  2777971 tttcataagttctcctaaacagtctcacaaaacttatgcaaatagataagctaaaataagccaatccaaa 2778040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 49938794 - 49938867
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgcca 172  Q
    |||||||| ||| | |||||||| | ||||||||||||||  |||||||||||| ||||||| |||||||||||    
T  49938794 tgaaaaaagcttttgaaaattgtcataagctgttttcataagttctcccaaacaatctcacaaaacttatgcca 49938867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 51929562 - 51929497
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaac 164  Q
    |||||||| ||||| |||||||| | |||||||||||||  ||||||||||||| |||||||||||    
T  51929562 tgaaaaaagcttatgaaaattgtcataagctgttttcatgaattctcccaaacaatctcacagaac 51929497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 14576677 - 14576569
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||| | |||||||| | |||||||||||| |  || |||||||||||  |||| || ||| |||| |||||||||| | ||||||||||||    
T  14576677 tgaaaaaagcttttgaaaattgtcataagctgttttcacaagttgtcccaaacagtgccacaaaatttaagccagtagataagctcaaataagccaatcc 14576578  T
Q  198 aaacaggcc 206  Q
    |||||||||    
T  14576577 aaacaggcc 14576569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 47432033 - 47432108
Alignment:
Q  2 aagcttgcataagctatttttataacaaaagataaaataa--ctagattgtttttcaatatgctataagttgtttt 75  Q
    |||||| |||||||||||||||||  ||||||||||||||   || ||||||||| ||||||||||||| ||||||    
T  47432033 aagcttacataagctatttttatagaaaaagataaaataaagttaaattgtttttgaatatgctataaggtgtttt 47432108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 33186367 - 33186462
Alignment:
Q  113 aaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccc 207  Q
    ||||||||| | || | |||||||||  |||||| | ||||||||||| ||||||||||||  ||||| || | ||||||||||||||||||||||    
T  33186367 aaaaattgtcataaccagttttcataagttctcctagacagtctcacaaaacttatgccaacggataaactcaaataagccaatccaaacaggccc 33186462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 5720988 - 5721074
Alignment:
Q  115 aaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaa 200  Q
    ||||||| | ||||||||||||||  |||||||||||||||  ||| ||||||||| | ||| |||||| | |||||||||||||||    
T  5720988 aaattgtcataagctgttttcataagttctcccaaacagtccaacaaaacttatgcaagtagttaagctcaaataagccaatccaaa 5721074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 34795443 - 34795354
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaagta 213  Q
    ||||||||||||||  ||||||||||||||||| || || |||||||| |||   |||| | |||| |||||||||||||||||| ||||    
T  34795443 aagctgttttcataagttctcccaaacagtctcgcaaaatttatgccagtaggctagctcaaataacccaatccaaacaggcccttagta 34795354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 36872806 - 36872887
Alignment:
Q  130 gttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 210  Q
    ||||||||| ||||||| |||||||||| || ||||||||    ||| |||||| | |||||||||||||||||||||||||    
T  36872806 gttttcataaattctccaaaacagtctcgcaaaacttatgttgttagttaagcttaaataagccaatccaaacaggccctaa 36872887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 2295280 - 2295348
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 208  Q
    |||||||||| ||||||| | |||||| | || |||||||||| | |||||||||||||||||||||||    
T  2295280 ttctcccaaatagtctcagaaaacttaagtcagtagataagctcaaataagccaatccaaacaggccct 2295348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 14385774 - 14385702
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaagt 212  Q
    |||||| ||| ||||||||  ||||||||||| |||||||||| | |||||||||||| ||||||||| ||||    
T  14385774 ttctccaaaatagtctcacgaaacttatgccagtagataagctcaaataagccaatccgaacaggccccaagt 14385702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 29904798 - 29904882
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    |||||||| ||| | |||||||  | |||||||||| |||  ||||| |||||||||||||| ||||||||| | ||||||||||    
T  29904798 tgaaaaaagcttttgaaaattgccataagctgtttttataagttctctcaaacagtctcacaaaacttatgcaagtagataagct 29904882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 34952291 - 34952359
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 208  Q
    |||||||||| | ||||||| | ||||| |||||||||||||| | |||||||||||||||||| ||||    
T  34952291 ttctcccaaataatctcacaaatcttatcccaatagataagctcaaataagccaatccaaacagaccct 34952359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 38001668 - 38001712
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatg 169  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||    
T  38001668 aagctgttttcataagttctcccaaacagtctcacaaaacttatg 38001712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 15477655 - 15477710
Alignment:
Q  154 tctcacagaacttatgccaatagataagctata-taagccaatccaaacaggccct 208  Q
    ||||||| ||||||||| | |||||||||| || ||||||||||||||||||||||    
T  15477655 tctcacaaaacttatgcaagtagataagctctaataagccaatccaaacaggccct 15477710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 3234102 - 3234044
Alignment:
Q  46 attgtttttcaatatgctataagttgtttttctaaataatattggataacttatgaaaa 104  Q
    |||||||||  |||||||||||||||||||| |||   |||||||| ||||||||||||    
T  3234102 attgtttttgtatatgctataagttgtttttataagctatattggagaacttatgaaaa 3234044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 15581058 - 15581092
Alignment:
Q  7 tgcataagctatttttataacaaaagataaaataa 41  Q
    ||||| |||||||||||||||||||||||||||||    
T  15581058 tgcatgagctatttttataacaaaagataaaataa 15581092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 33204375 - 33204333
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    |||||||||||||||||||| |||||||| || ||||||||||    
T  33204375 ttctcccaaacagtctcacaaaacttatgtcagtagataagct 33204333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 50644248 - 50644174
Alignment:
Q  129 tgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaaca 202  Q
    ||||||||||  |||||||||||||||||||| ||| ||||  | |||||||||| | ||||| |||||||||||    
T  50644248 tgttttcataagttctcccaaacagtctcacaaaacatatgttagtagataagctcaaataagtcaatccaaaca 50644174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 4445774 - 4445815
Alignment:
Q  119 tgttacaagctgttttcatacattctcccaaacagtctcaca 160  Q
    ||||| |||||| ||||||| |||||||||||||||||||||    
T  4445774 tgttataagctgctttcataaattctcccaaacagtctcaca 4445815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 28287893 - 28287958
Alignment:
Q  146 ccaaacagtctcacagaacttatgccaatagataagctata-taagccaatccaaacaggccctaa 210  Q
    ||||| ||||||||| | |||||||||||| |||| || || |||||||||||||||||| |||||    
T  28287893 ccaaatagtctcacaaagcttatgccaatatataaactctaataagccaatccaaacaggtcctaa 28287958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1510443 - 1510407
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaa 37  Q
    |||||||||| |||||||||||| |||||||||||||    
T  1510443 taagcttgcaaaagctatttttaaaacaaaagataaa 1510407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 7941679 - 7941719
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaact 165  Q
    |||||||||||||| ||||| ||||||||||||||| ||||    
T  7941679 aagctgttttcataaattcttccaaacagtctcacaaaact 7941719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 9572098 - 9572054
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatg 169  Q
    ||||||||||||||  |||||||||||||||||||| | ||||||    
T  9572098 aagctgttttcataagttctcccaaacagtctcacaaatcttatg 9572054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 17603518 - 17603413
Alignment:
Q  4 gcttgcataagctatttttataacaaaagat---aaaataac--tagattgtttttcaatatgctataagttgtttttctaaataatattggataactta 98  Q
    ||||| ||||||||||||| ||  |||||||   ||||||||  || |||||||||  |||||||||||||||||||| |||   |||||||| |||||     
T  17603518 gcttgaataagctatttttgtagaaaaagattaaaaaataacgttaaattgtttttgtatatgctataagttgtttttataagctatattggagaacttc 17603419  T
Q  99 tgaaaa 104  Q
    ||||||    
T  17603418 tgaaaa 17603413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36872204 - 36872244
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataa 41  Q
    |||| ||||| |||||||||||||| |||||||||||||||    
T  36872204 taagattgcacaagctatttttatagcaaaagataaaataa 36872244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 16458112 - 16458036
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac-tagattgtttttcaatatgctataagttgttttt 76  Q
    ||||||||||||||||||||||||| |||||||||||||||| || |||||||||  ||||||||||||||||||||    
T  16458112 taagcttgcataagctatttttatagcaaaagataaaataacttaaattgtttttgtatatgctataagttgttttt 16458036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 16937906 - 16937800
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||||| ||| |||| | ||||||||||||||  |||| ||||||| ||||||| ||||||||| | |||||||||| | ||||||||||||    
T  16937906 tgaaaaaagcttatgaaatttgtcataagctgttttcataagttcttccaaacactctcacaaaacttatgctagtagataagctcaaataagccaatcc 16937807  T
Q  198 aaacagg 204  Q
    |||||||    
T  16937806 aaacagg 16937800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 34102310 - 34102222
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaagt 212  Q
    ||||| |||||||| |||| |||||||||| ||||| ||||||||||||||| |||||| | |||||  | ||||||||||||||||||    
T  34102310 aagctattttcataaattcccccaaacagtgtcacaaaacttatgccaatagttaagctcaaataagtgattccaaacaggccctaagt 34102222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 12433170 - 12433079
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaagtatg 215  Q
    ||||| ||||||||  |||||||||||| ||||||| ||| ||||||| || ||||| | | ||||||||||||||||||||||| ||||||    
T  12433170 aagctattttcataacttctcccaaacaatctcacaaaacctatgccagtaaataagttcaaataagccaatccaaacaggcccttagtatg 12433079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 10640003 - 10640109
Alignment:
Q  102 aaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaa 200  Q
    ||||| ||||| |||| ||| | ||||||||||||||  |||||||||||| | ||||| |||||||| || ||||||| || | |||||| ||||||||    
T  10640003 aaaaagcttatgaaaaatgtcataagctgttttcataagttctcccaaacaatatcacaaaacttatgtcagtagataaactcaaataagctaatccaaa 10640102  T
Q  201 caggccc 207  Q
    |||||||    
T  10640103 caggccc 10640109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42500359 - 42500319
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataa 41  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  42500359 taagcttgcataagctatttttatatcaaaagataaaataa 42500319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 29925780 - 29925882
Alignment:
Q  4 gcttgcataagctatttttataacaaaagataaaataac--tagattgtttttcaatatgctataagttgtttttctaaataatattggataacttatga 101  Q
    |||||||||||||||||||||| |||||||||||||| |  || ||||||| |  || |||||||||||||||   |||   |||||||| |||||||||    
T  29925780 gcttgcataagctatttttatagcaaaagataaaatagcgttaaattgtttctgtatgtgctataagttgtttacataagctatattggagaacttatga 29925879  T
Q  102 aaa 104  Q
    |||    
T  29925880 aaa 29925882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 32942650 - 32942748
Alignment:
Q  108 cttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggc 205  Q
    ||||| |||| ||| | ||||||| |||||| ||||||||||||||||  ||| |||||||| || |||| |||||  |||||| ||||||||||||||    
T  32942650 cttatgaaaaatgtcataagctgtattcataaattctcccaaacagtcaaacaaaacttatgtcagtagaaaagctcgtataagtcaatccaaacaggc 32942748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 43300953 - 43301035
Alignment:
Q  127 gctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 208  Q
    |||||||| |||  ||||||| |||||||||| | ||||||||||| || ||||||| | ||||||||||||||||| |||||    
T  43300953 gctgtttttataacttctccccaacagtctcataaaacttatgccattatataagctcaaataagccaatccaaacatgccct 43301035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 32941545 - 32941622
Alignment:
Q  128 ctgttttcatacattctcccaaacagtctcacagaacttatgccaatagat-aagctat-ataagccaatccaaacag 203  Q
    |||||||||||  ||||||||||| ||||||||||||||||| || ||||| ||||| | ||||| ||||||||||||    
T  32941545 ctgttttcataagttctcccaaacggtctcacagaacttatgtcagtagataaagctctaataagtcaatccaaacag 32941622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 1773101 - 1773024
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacag 203  Q
    ||||||||||||||  ||||||||  |||||||||| ||||||||  | |||||||||| | ||||||||||||||||||    
T  1773101 aagctgttttcataagttctccca--cagtctcacaaaacttatggaagtagataagctaaaataagccaatccaaacag 1773024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 7705995 - 7705911
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 208  Q
    ||||||||||||||  |||||||||| ||  ||||| ||||||||| | |||||| ||| | ||||| |||||||||||||||||    
T  7705995 aagctgttttcataagttctcccaaagagcgtcacaaaacttatgctagtagatatgctcaaataagtcaatccaaacaggccct 7705911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25461780 - 25461744
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaa 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  25461780 taagcttgcataagctatttttatagcaaaagataaa 25461744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 10391298 - 10391329
Alignment:
Q  10 ataagctatttttataacaaaagataaaataa 41  Q
    ||||||||||||||||||||||||||||||||    
T  10391298 ataagctatttttataacaaaagataaaataa 10391329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 11615453 - 11615484
Alignment:
Q  10 ataagctatttttataacaaaagataaaataa 41  Q
    ||||||||||||||||||||||||||||||||    
T  11615453 ataagctatttttataacaaaagataaaataa 11615484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 25461629 - 25461559
Alignment:
Q  140 attctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 210  Q
    ||||| ||||||||| ||||| |||||||||  ||||||||||| | |||||||||||||||| ||||||||    
T  25461629 attctaccaaacagtatcaca-aacttatgctgatagataagctcaaataagccaatccaaacgggccctaa 25461559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 12425662 - 12425704
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    |||||||||||||||||||| |||||||| || ||||||||||    
T  12425662 ttctcccaaacagtctcacaaaacttatgacagtagataagct 12425704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 12857361 - 12857251
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||| | |||||||| | ||| ||||||||||  ||||||  || ||| ||||| |||||| | ||||||||||||| | |||| |||||||    
T  12857361 tgaaaaaagcttgtgaaaattgtcataagttgttttcataagttctccggaaaagtttcacaaaacttacgtcaatagataagctcaaataaaccaatcc 12857262  T
Q  198 aaacaggccct 208  Q
    ||||| |||||    
T  12857261 aaacaagccct 12857251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 15015891 - 15015974
Alignment:
Q  99 tgaaaaaatcttataaaaattgt-tacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    |||||||||||||| |||||||| | |||  | ||||||||  |||||||||||||||||||| | |||||| || ||||||||||    
T  15015891 tgaaaaaatcttatgaaaattgtcttcaa--tattttcataagttctcccaaacagtctcacaaagcttatgtcagtagataagct 15015974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 16457993 - 16457935
Alignment:
Q  108 cttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaactt 166  Q
    ||||| |||| ||| | ||||||||||||||  |||||||||||||||||||| |||||    
T  16457993 cttatgaaaactgtcataagctgttttcataagttctcccaaacagtctcacaaaactt 16457935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 32372701 - 32372775
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataa-gctatataagccaatccaaacaggccctaagtat 214  Q
    |||| ||||||||||||||| ||||||||||| ||||||| || | |||||||||| || ||| ||||| |||||    
T  32372701 ttcttccaaacagtctcacaaaacttatgccagtagataaggccaaataagccaatacatacaagcccttagtat 32372775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 39248171 - 39248221
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaata 175  Q
    |||||||||| |||  |||||||||||||||||||| ||||||||| ||||    
T  39248171 aagctgtttttataagttctcccaaacagtctcacaaaacttatgctaata 39248221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 41981698 - 41981644
Alignment:
Q  127 gctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataag 181  Q
    ||||||||||||  |||||||||||||||||||| |||| |||| | ||||||||    
T  41981698 gctgttttcataagttctcccaaacagtctcacaaaactaatgctagtagataag 41981644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 42100400 - 42100466
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 206  Q
    ||||| || |||||| |||| || ||||||||||||||||||| | ||||||| |||||||||||||    
T  42100400 ttctctcacacagtcacacaaaatttatgccaatagataagctcaaataagcccatccaaacaggcc 42100466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 1465017 - 1464972
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgc 170  Q
    ||||||||||||||  ||||||| ||||||||| ||||||||||||    
T  1465017 aagctgttttcataagttctcccgaacagtctcgcagaacttatgc 1464972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 9107163 - 9107240
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaac 201  Q
    |||||||||||||   |||||||||||| ||||||| |||||||| || ||||||| || | ||||| ||||||||||    
T  9107163 aagctgttttcatgagttctcccaaacattctcacaaaacttatgtcactagataaactcaaataagtcaatccaaac 9107240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 34736508 - 34736439
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcccta 209  Q
    ||||||||||| |||||||| |||||||| ||  ||||||||| | ||||| ||||||||||| ||||||    
T  34736508 ttctcccaaactgtctcacaaaacttatgtcaccagataagctcaaataagtcaatccaaacatgcccta 34736439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 35445847 - 35445786
Alignment:
Q  119 tgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataa 180  Q
    ||||| |||||||||||||| |||||  |||| ||||||||| |||||||| || |||||||    
T  35445847 tgttataagctgttttcataaattctgtcaaagagtctcacaaaacttatgtcagtagataa 35445786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25461889 - 25461853
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaa 37  Q
    ||||||||||||||||||||||||| || ||||||||    
T  25461889 taagcttgcataagctatttttatagcagaagataaa 25461853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 43279661 - 43279460
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataactaga--ttgtttttcaatatgctataagttgtttttctaaataatattggataactta 98  Q
    ||||||||||||||||||||||||| |||||||||||||||   ||  ||||||||   ||||||||||||||||||| |||   |||||||| |||||     
T  43279661 taagcttgcataagctatttttatatcaaaagataaaataatgtgaaattgtttttg--tatgctataagttgtttttataagctatattggagaacttg 43279564  T
Q  99 tgaaaa-----------aatcttataaaaattgttacaagctgttttcatacattctc--ccaaacagtctcacagaacttatgccaatagataagctat 185  Q
    ||||||           || ||||| |||||||| | |||||||||||||| ||||||  ||||||||||||||| ||||||||| | |||||||||||     
T  43279563 tgaaaataagttgaaaaaagcttatgaaaattgtcataagctgttttcataaattctctcccaaacagtctcacaaaacttatgctagtagataagctaa 43279464  T
Q  186 ataa 189  Q
    ||||    
T  43279463 ataa 43279460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 210
Target Start/End: Original strand, 30331755 - 30331910
Alignment:
Q  58 tatgctataagttgtttttctaaataatattggataacttatgaaaa--aatcttataaaaattgttacaagctgttttcatacattctcccaaacagtc 155  Q
    ||||||||||| | ||||| |||   |||||||| ||||||||||||  || ||| | |||||||| | ||| | ||||||||  |||||||||||||||    
T  30331755 tatgctataagctatttttataagatatattggagaacttatgaaaataaagcttgtgaaaattgtcataaggttttttcataagttctcccaaacagtc 30331854  T
Q  156 tcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 210  Q
    ||||| |||||||| || |||||||||| | ||||| ||||||||||| |||||||    
T  30331855 tcacaaaacttatgtcagtagataagctgaaataagtcaatccaaacaagccctaa 30331910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 32592523 - 32592744
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac--tagattgtttttcaatatgctataagttgtttttctaaataatattggataactta 98  Q
    ||||||||||||| |||||||||||  ||||||||||||||   || ||||||||  | || |||||||||||||||| |||  ||||||||| ||||||    
T  32592523 taagcttgcataaactatttttatagaaaaagataaaataatgttaaattgttttgta-tacgctataagttgtttttataagcaatattggagaactta 32592621  T
Q  99 tgaaaa-----------aatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct---a 184  Q
    ||||||           || ||||| ||||||||   ||||| ||||||||  |||||||||| || ||| || |||||||||||  |||||||||   |    
T  32592622 tgaaaataagttgagaaaagcttatgaaaattgtcgtaagctattttcataagttctcccaaatagactcccaaaacttatgccatcagataagcttaaa 32592721  T
Q  185 tataagccaatccaaacaggccc 207  Q
    |||||||||||||||||||||||    
T  32592722 tataagccaatccaaacaggccc 32592744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 15305721 - 15305835
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||||| |||||||  | ||| |||| ||| |  |||| ||||||||| ||||| |||||||| ||||||||||||| | ||||||||||||    
T  15305721 tgaaaaaaacttatgaaaattgccataagttgttgtcaaaagttctaccaaacagtttcacaaaacttatgtcaatagataagctcaaataagccaatcc 15305820  T
Q  198 aaacaggccctaagt 212  Q
    |||||||||||||||    
T  15305821 aaacaggccctaagt 15305835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 42659208 - 42659122
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 210  Q
    |||||||||||| |  |||||||||||||||||||| ||||||||||| || ||||||| | ||||||||| ||||||||| |||||    
T  42659208 aagctgttttcaaaacttctcccaaacagtctcacaaaacttatgccagtaaataagctcaaataagccaacccaaacaggtcctaa 42659122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 7928271 - 7928211
Alignment:
Q  149 aacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 208  Q
    |||||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||||    
T  7928271 aacagtctcacacaacttatgtcaatagataagctcaaataagccaatccaaacaggccct 7928211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 15757681 - 15757597
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    |||||||| ||| | |||||||| | |||| ||||||||| |||||||||| |||||||||| ||||||||||| || |||||||    
T  15757681 tgaaaaaagcttctgaaaattgtcataagcagttttcataaattctcccaagcagtctcacaaaacttatgccagtaaataagct 15757597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 20933694 - 20933796
Alignment:
Q  4 gcttgcataagctatttttataacaaaagataaaataa--ctagattgtttttcaatatgctataagttgtttttctaaataatattggataacttatga 101  Q
    |||||||||| ||||||||| |||||||||||||||||   || |||| || |  ||||||| ||||||||||||||||   |||||||| |||||||||    
T  20933694 gcttgcataatctatttttacaacaaaagataaaataatgttaaattgcttctatatatgctctaagttgtttttctaagctatattggaaaacttatga 20933793  T
Q  102 aaa 104  Q
    |||    
T  20933794 aaa 20933796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 42868462 - 42868393
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcccta 209  Q
    |||||||||||||| ||||  ||| |||||||||||||||||| | ||||| ||||||||||||||||||    
T  42868462 ttctcccaaacagtgtcacgaaacgtatgccaatagataagctcaaataaggcaatccaaacaggcccta 42868393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 11863990 - 11864061
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataag-ctatataagccaatccaaacaggccctaagt 212  Q
    |||||||||||||||||||||| |||| |||| || ||||| | | |||||||||||||||||||||||||||    
T  11863990 ttctcccaaacagtctcacagacctta-gccagtaaataagaccaaataagccaatccaaacaggccctaagt 11864061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 3312165 - 3312234
Alignment:
Q  140 attctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 208  Q
    |||||||| |||||||||||| |||||| | || |||||||||| | ||||||||||||||||| |||||    
T  3312165 attctccccaacagtctcacaaaacttacgtcagtagataagctcaaataagccaatccaaacaagccct 3312234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 9174910 - 9174946
Alignment:
Q  147 caaacagtctcacagaacttatgccaatagataagct 183  Q
    |||||||||||||| ||||||||||||||||||||||    
T  9174910 caaacagtctcacataacttatgccaatagataagct 9174946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15305593 - 15305633
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataa 41  Q
    ||||||||||||||||||||||||| |||| ||||||||||    
T  15305593 taagcttgcataagctatttttatagcaaatgataaaataa 15305633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 32837389 - 32837453
Alignment:
Q  119 tgttacaagctgttttcatacattctcccaaacagtctcac-agaacttatgccaatagataagc 182  Q
    ||||| ||||||||||||||  ||||||||||||||||||| || |||||| ||| |||||||||    
T  32837389 tgttataagctgttttcataagttctcccaaacagtctcacaagtacttataccactagataagc 32837453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 41851586 - 41851666
Alignment:
Q  103 aaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    |||| ||||| |||| ||| | ||| ||||| |||| |||||||||| |||||||||| ||||| || |||||||||||||    
T  41851586 aaaagcttatgaaaagtgtcataagttgtttccataaattctcccaatcagtctcacaaaacttttgtcaatagataagct 41851666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 42420419 - 42420356
Alignment:
Q  10 ataagctatttttataacaaaagataaaataac--tagattgtttttcaatatgctataagttg 71  Q
    |||||||||||||||| ||||||||||||||||  || |||||||||  ||||| |||||||||    
T  42420419 ataagctatttttatagcaaaagataaaataacgttaaattgtttttgtatatgatataagttg 42420356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 5045282 - 5045251
Alignment:
Q  10 ataagctatttttataacaaaagataaaataa 41  Q
    ||||||||||||||||||||||||||||||||    
T  5045282 ataagctatttttataacaaaagataaaataa 5045251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 5998827 - 5998796
Alignment:
Q  10 ataagctatttttataacaaaagataaaataa 41  Q
    ||||||||||||||||||||||||||||||||    
T  5998827 ataagctatttttataacaaaagataaaataa 5998796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 32821754 - 32821785
Alignment:
Q  10 ataagctatttttataacaaaagataaaataa 41  Q
    ||||||||||||||||||||||||||||||||    
T  32821754 ataagctatttttataacaaaagataaaataa 32821785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26201964 - 26202006
Alignment:
Q  1 taagcttgcataagctatttttataacaaa-agataaaataac 42  Q
    ||||||||||||||||||||||||| |||| ||||||||||||    
T  26201964 taagcttgcataagctatttttatagcaaagagataaaataac 26202006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 26202075 - 26202189
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||||| |||||||| | ||| |||| ||||| |||||  |||| | ||||||| |||||||| ||  ||||||| | | |||||  |||||    
T  26202075 tgaaaaaagcttatgaaaattgtcataagttgttctcataaattctagcaaagaatctcacaaaacttatgtcagcagataagttcaaataagttaatcc 26202174  T
Q  198 aaacaggccctaagt 212  Q
    |||||||||||||||    
T  26202175 aaacaggccctaagt 26202189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 31744371 - 31744453
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataag-ctatataagccaatccaaacaggcc 206  Q
    |||||||||||| |  ||||| |||||||||||| | |||||||| |  |||||||| | | |||||||||||||||||||||    
T  31744371 aagctgttttcaaaagttctctcaaacagtctcagaaaacttatgtcggtagataagcccaaataagccaatccaaacaggcc 31744453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 41812115 - 41812005
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||||| |||| ||| | |||||||||||| |  ||||||||||||| |||||  ||||| || |   ||||||||| | ||||||||||||    
T  41812115 tgaaaaaagcttatgaaaaatgtcataagctgttttcaaaagttctcccaaacagcctcactaaacttttgactgcagataagctcaaataagccaatcc 41812016  T
Q  198 aaacaggccct 208  Q
    ||||| |||||    
T  41812015 aaacaagccct 41812005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 27317082 - 27317025
Alignment:
Q  147 caaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacag 203  Q
    |||||||| ||||| | |||||||||||||||||||| | ||||| ||||||||||||    
T  27317082 caaacagtgtcacaaagcttatgccaatagataagctaaaataagtcaatccaaacag 27317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 27317456 - 27317533
Alignment:
Q  129 tgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggc 205  Q
    ||||||||||  ||||| |||||||||||| | |||||||| |  |||||||||| | ||||| ||||||||||||||    
T  27317456 tgttttcataagttctctcaaacagtctcataaaacttatgtcggtagataagctcaaataagtcaatccaaacaggc 27317533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 33319795 - 33319737
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaa 200  Q
    |||||||||||||||||||  ||||||||||| |||| ||||| | |||||||||||||||    
T  33319795 ttctcccaaacagtctcac--aacttatgccagtagacaagctcaaataagccaatccaaa 33319737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 41241266 - 41241162
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaat--aactagattgtttttcaatatgctataagttgtttttctaaataatattggataactta 98  Q
    ||||||| |||||||||||| ||||  ||||||||||||  |  || |||||||||  ||||||||||||| ||||| |||| | || ||||| |||||     
T  41241266 taagcttacataagctatttctataggaaaagataaaatgaagttaaattgtttttgtatatgctataagtagttttcctaagttatcttggaaaacttg 41241167  T
Q  99 tgaaa 103  Q
    |||||    
T  41241166 tgaaa 41241162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 44590097 - 44590178
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggc 205  Q
    ||||||||||||||  ||||  ||||| |||||||| |||||||| | |||||||| || | ||||||||||||||| ||||    
T  44590097 aagctgttttcataagttctttcaaacggtctcacaaaacttatgtctatagataaactcaaataagccaatccaaagaggc 44590178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 4607014 - 4607082
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 208  Q
    |||||||||| ||||||||| |||||||     |||||||||| | |||||||||||||||||||||||    
T  4607014 ttctcccaaatagtctcacaaaacttatattggtagataagctcaaataagccaatccaaacaggccct 4607082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 15370302 - 15370238
Alignment:
Q  144 tcccaaacagtctcacagaa-cttatgccaatagataagct-atataagccaatccaaacaggcc 206  Q
    ||||||||||||||||| |  ||||||||| |||||||||| | ||||| |||||||||||||||    
T  15370302 tcccaaacagtctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaacaggcc 15370238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 16451195 - 16451239
Alignment:
Q  129 tgttttcatacattctcccaaacagtctcacagaacttatgccaa 173  Q
    ||||||||||  ||||||||||| |||||||||||||||| ||||    
T  16451195 tgttttcataagttctcccaaacggtctcacagaacttattccaa 16451239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 18962160 - 18962132
Alignment:
Q  13 agctatttttataacaaaagataaaataa 41  Q
    |||||||||||||||||||||||||||||    
T  18962160 agctatttttataacaaaagataaaataa 18962132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 24100977 - 24101045
Alignment:
Q  101 aaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatg 169  Q
    |||||| ||||| || ||||| | ||| ||||| ||||  |||||||||||||||||||| ||||||||    
T  24100977 aaaaaagcttatgaatattgtcataaggtgtttccataagttctcccaaacagtctcacaaaacttatg 24101045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 36125434 - 36125487
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataa 180  Q
    |||||||||||||| ||||||   |||| ||||||||||||||||||| |||||||    
T  36125434 aagctgttttcatatattctct--aacactctcacagaacttatgccagtagataa 36125487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 36534841 - 36534885
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatg 169  Q
    ||||||||||||||  || ||||||||||||||||| ||||||||    
T  36534841 aagctgttttcataagttatcccaaacagtctcacaaaacttatg 36534885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 43529856 - 43529776
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctca-cagaacttatgccaatagataagct-atataagccaatccaaacag 203  Q
    |||||||||||||| ||||||||||||||| |||  ||  ||||| |||||||||||||| | ||||| |||| |||||||    
T  43529856 aagctgttttcataaattctcccaaacagtgtcagaagtgcttataccaatagataagctcaaataagtcaattcaaacag 43529776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 43717928 - 43717843
Alignment:
Q  128 ctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaagt 212  Q
    |||||||||||  |||||||||| ||||||||| |||||||| ||||||||||||| | ||||||||||||||| |||||||||||    
T  43717928 ctgttttcataagttctcccaaatagtctcacaaaacttatgtcaatagataagctcaaataagccaatccaaataggccctaagt 43717843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 43045748 - 43045641
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagc-tatataagccaatcc 197  Q
    |||||||| ||||| |||||||||  ||||||||||||||   ||||| ||||||||||||| | ||||||| | ||||||||| || ||||||||||||    
T  43045748 tgaaaaaagcttattaaaattgttgtaagctgttttcataagatctccaaaacagtctcacaaatcttatgctagtagataagcttaaataagccaatcc 43045649  T
Q  198 aaacaggc 205  Q
    ||||||||    
T  43045648 aaacaggc 43045641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 28763417 - 28763498
Alignment:
Q  101 aaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagc 182  Q
    |||||| ||||| |||||||||| ||||||||||||||  |||||||||||||||||||| ||||||||  | |||||||||    
T  28763417 aaaaaagcttatgaaaattgttataagctgttttcataagttctcccaaacagtctcacaaaacttatgttactagataagc 28763498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 30251451 - 30251367
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 208  Q
    ||||||||||| ||  |||||||||||||||||||  |||||||| || |||||||||| | |||||||||||||||||||||||    
T  30251451 aagctgttttcgtaagttctcccaaacagtctcacgaaacttatgtcagtagataagctcaaataagccaatccaaacaggccct 30251367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 209
Target Start/End: Complemental strand, 35644011 - 35643900
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataag-ctatataagccaatcc 197  Q
    |||||||| ||||| |||||||| | || || ||||||||  || ||||||||||||||||| || |||||||| |||||||| | | ||||||||||||    
T  35644011 tgaaaaaagcttatgaaaattgtcataaactattttcataagttatcccaaacagtctcacaaaaattatgccagtagataagcccaaataagccaatcc 35643912  T
Q  198 aaacaggcccta 209  Q
     |||||||||||    
T  35643911 caacaggcccta 35643900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 36963362 - 36963272
Alignment:
Q  114 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacag 203  Q
    |||||||| | ||||||||||  ||  |||||||||||||||||||| ||||||||||| ||||| |||| | ||||||||||||||||||    
T  36963362 aaaattgtcaaaagctgtttttgtaagttctcccaaacagtctcacaaaacttatgccagtagattagctcaaataagccaatccaaacag 36963272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 26771327 - 26771396
Alignment:
Q  114 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    |||||||| | ||||||||||||||  |||||||||||||||||||| ||||||||||  ||||||||||    
T  26771327 aaaattgtcataagctgttttcataagttctcccaaacagtctcacaaaacttatgcccgtagataagct 26771396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32975996 - 32976037
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac 42  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  32975996 taagcttgcataagctatttttatagcaaaagataaaataac 32976037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 38648425 - 38648506
Alignment:
Q  126 agctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagc-tatataagccaatccaaacaggcc 206  Q
    |||||||||||||   ||||||||||||||||||| |||||||| || ||||||| | || |||||||||||| ||||||||    
T  38648425 agctgttttcataaggtctcccaaacagtctcacaaaacttatgtcagtagataatcttaaataagccaatcctaacaggcc 38648506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 35749593 - 35749509
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    ||||||||  |||| |||| || |||||||||||||||||  ||||| ||||||| ||| || |||||||| |||||||||||||    
T  35749593 tgaaaaaagtttatgaaaaatgctacaagctgttttcataagttctctcaaacagcctcgcaaaacttatgtcaatagataagct 35749509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 38602416 - 38602483
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccc 207  Q
    ||||||||||||| |||||| |||||||| || |||||||||| | ||||| ||||||||||||||||    
T  38602416 ttctcccaaacagcctcacaaaacttatgtcagtagataagctcaaataagtcaatccaaacaggccc 38602483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 10758280 - 10758210
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatg 169  Q
    |||||||| ||| | |||||||| | |||||||||||||| |||||  |||||||||||||| ||||||||    
T  10758280 tgaaaaaagcttttgaaaattgtcataagctgttttcataaattctatcaaacagtctcacaaaacttatg 10758210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 18133703 - 18133801
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagc-tatataagccaatc 196  Q
    |||||||| ||| | |||||||||| |||||| ||||| |   ||||||||||||||||||| ||||||| | | ||||||||| || |||||||||||    
T  18133703 tgaaaaaagcttgtgaaaattgttataagctgatttcacaagctctcccaaacagtctcacaaaacttatactagtagataagcttaaataagccaatc 18133801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 12976259 - 12976360
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||| | |||||||||| |||||||| |||||  |||| | ||||||||||||| | ||||||| | |||||||||| | ||||||||| ||    
T  12976259 tgaaaaaagcttttgaaaattgttagaagctgttctcataagttctactaaacagtctcacaaaccttatgctagtagataagctcaaataagccaaacc 12976358  T
Q  198 aa 199  Q
    ||    
T  12976359 aa 12976360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 6882001 - 6882083
Alignment:
Q  126 agctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagctatataagccaatccaaacaggccctaa 210  Q
    |||||||||||||  |||||||||||||||||||| |||||||| | |||  | || || ||||||||||||||||| |||||||    
T  6882001 agctgttttcataggttctcccaaacagtctcacaaaacttatgtc-atatgtcag-tagataagccaatccaaacaagccctaa 6882083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12497365 - 12497325
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataa 41  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  12497365 taagcttgcataagccatttttatagcaaaagataaaataa 12497325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 207
Target Start/End: Complemental strand, 35534635 - 35534527
Alignment:
Q  100 gaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcca 198  Q
    ||||||| ||| | |||||||| | |||||||||||| |  ||||| |||||||||||||| ||||||||  | |||||||||| | ||||| || || |    
T  35534635 gaaaaaagcttgttaaaattgtcataagctgttttcacaagttctctcaaacagtctcacaaaacttatgttagtagataagctcaaataagtcattcta 35534536  T
Q  199 aacaggccc 207  Q
    |||||||||    
T  35534535 aacaggccc 35534527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 9130297 - 9130238
Alignment:
Q  144 tcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaaca 202  Q
    ||||||| ||||||||| ||||||||||| |||||||||| | |||||| ||||||||||    
T  9130297 tcccaaatagtctcacaaaacttatgccagtagataagctcaaataagctaatccaaaca 9130238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 18591957 - 18591915
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    |||||||||||||||||| | ||||||| ||||||||||||||    
T  18591957 ttctcccaaacagtctcataaaacttataccaatagataagct 18591915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 40859796 - 40859703
Alignment:
Q  108 cttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaac 201  Q
    ||||| |||||||| | |||||||||||||| | ||||| |||||| |||||| ||||||||  |  ||||||||| | ||||||||||||||||    
T  40859796 cttatgaaaattgtcataagctgttttcata-agtctccaaaacagcctcacaaaacttatgttagcagataagctcaaataagccaatccaaac 40859703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 44792745 - 44792807
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaaca 202  Q
    |||||| ||||||||||||| || |||| ||| |||||||||| | |||||||||||||||||    
T  44792745 ttctccaaaacagtctcacataatttatcccagtagataagctcaaataagccaatccaaaca 44792807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6525754 - 6525795
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac 42  Q
    ||||||||||||||||||||||||| |||||  |||||||||    
T  6525754 taagcttgcataagctatttttatagcaaaaactaaaataac 6525795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 15180602 - 15180698
Alignment:
Q  114 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccctaa 210  Q
    |||||||| | || ||||||||| | ||||||| ||| ||||||| | |||||||| || ||||||| || | ||||||||||||||||||| |||||    
T  15180602 aaaattgtcaaaacctgttttcagaaattctccaaaa-agtctcataaaacttatggcagtagataaactcaaataagccaatccaaacaggtcctaa 15180698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 29818926 - 29818857
Alignment:
Q  140 attctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 208  Q
    ||||||| ||||||||||||| ||||||||  | |||||||||| | ||| ||||||||||||| |||||    
T  29818926 attctccgaaacagtctcacaaaacttatgatagtagataagctcaaatatgccaatccaaacatgccct 29818857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 12497053 - 12496985
Alignment:
Q  141 ttctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 208  Q
    ||||| |||||||||||||| |||||||||||  ||||||||| | ||||  ||||||||| |||||||    
T  12497053 ttctctcaaacagtctcacaaaacttatgccaggagataagctcaaataaatcaatccaaataggccct 12496985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 27754479 - 27754535
Alignment:
Q  128 ctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagcta 184  Q
    |||||||||||  |||||||||| ||||||||| ||||||||  |||| ||||||||    
T  27754479 ctgttttcataagttctcccaaatagtctcacaaaacttatgataataaataagcta 27754535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 31716250 - 31716166
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    |||||||| ||||| || | ||| | |||||||||||| |  |||||| ||||||||||| | ||  ||||||||||||||||||    
T  31716250 tgaaaaaagcttatgaagaatgtcataagctgttttcaaaagttctccgaaacagtctcaaaaaaaatatgccaatagataagct 31716166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38353286 - 38353325
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataa 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  38353286 taagcttgcataagctatttttat-gcaaaagataaaataa 38353325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 9559419 - 9559364
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataa 180  Q
    ||||||||||||||  |||||| ||||||||||||| |||||||||||||||||||    
T  9559419 aagctgttttcataacttctcctaaacagtctcacaaaacttatgccaatagataa 9559364  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 6538587 - 6538672
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcccta 209  Q
    |||||||||||||  |||||||| |||||||||||  ||||||||||| || |||| || | ||||| ||||||||||||||||||    
T  6538587 aagctgttttcatcaattctcccgaacagtctcaccaaacttatgccactacataaactcaaataagacaatccaaacaggcccta 6538672  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 848036 - 848147
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||||  |||| ||| | |||| ||||| |||  |||| ||||||||||||||| |||||||| | ||||||||||| | ||||| ||||||    
T  848036 tgaaaaaagcttaagaaaaatgtcataagcagtttttataagttcttccaaacagtctcacaaaacttatg-ctatagataagctcaaataaggcaatcc 848134  T
Q  198 aaacaggccctaa 210  Q
    |||||||||||||    
T  848135 aaacaggccctaa 848147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 4163212 - 4163304
Alignment:
Q  111 ataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaaca 202  Q
    ||||||||||| | ||| ||||||||||  ||||| | |||||||||  | ||||||||||| |||||||||| | |||||||||||||||||    
T  4163212 ataaaaattgtcataagttgttttcataggttctcacgaacagtctcgtaaaacttatgccagtagataagctcaaataagccaatccaaaca 4163304  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 4224833 - 4224925
Alignment:
Q  111 ataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaaca 202  Q
    ||||||||||| | ||| ||||||||||  ||||| | |||||||||  | ||||||||||| |||||||||| | |||||||||||||||||    
T  4224833 ataaaaattgtcataagttgttttcataggttctcacgaacagtctcgtaaaacttatgccagtagataagctcaaataagccaatccaaaca 4224925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 18076132 - 18076209
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataa--ctagattgtttttcaatatgctataagttgttttt 76  Q
    |||||||||||||| |||||||||| ||||||| |||||||   || |||||||||| |  |||||||||||||||||    
T  18076132 taagcttgcataagttatttttatagcaaaagagaaaataaggttaaattgtttttctaattgctataagttgttttt 18076209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 33074949 - 33074895
Alignment:
Q  129 tgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct 183  Q
    ||||||||| ||||||||| |||||||||||| |||| ||| |||||||||||||    
T  33074949 tgttttcatccattctccccaacagtctcacaaaactcatggcaatagataagct 33074895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 30536576 - 30536637
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagctata 186  Q
    ||||| ||||||||  | |||||||||||||||||| |||||| |||| |||||||||||||    
T  30536576 aagctattttcataagtcctcccaaacagtctcacaaaacttacgccagtagataagctata 30536637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30536692 - 30536651
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac 42  Q
    ||||||||||||||||||||||||| |||||||||| |||||    
T  30536692 taagcttgcataagctatttttatagcaaaagataagataac 30536651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 3171559 - 3171527
Alignment:
Q  7 tgcataagctatttttataacaaaagataaaat 39  Q
    |||||||||||||||||||||||||||||||||    
T  3171559 tgcataagctatttttataacaaaagataaaat 3171527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 20370844 - 20370875
Alignment:
Q  10 ataagctatttttataacaaaagataaaataa 41  Q
    ||||||||||||||||||||||||||||||||    
T  20370844 ataagctatttttataacaaaagataaaataa 20370875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 29754211 - 29754172
Alignment:
Q  3 agcttgcataagctatttttataacaaaagataaaataac 42  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  29754211 agcttgcataagctattttagtaacaaaagataaaataac 29754172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Complemental strand, 2027530 - 2027500
Alignment:
Q  11 taagctatttttataacaaaagataaaataa 41  Q
    |||||||||||||||||||||||||||||||    
T  2027530 taagctatttttataacaaaagataaaataa 2027500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 6016505 - 6016404
Alignment:
Q  5 cttgcataagctatttttataacaaaagataaaataa--ctagattgtttttcaatatgctataagttgtttttctaaataatattggataacttatgaa 102  Q
    |||||||||| |||||| |||||||||||||||||||   |  ||||||||| ||||| ||| | ||||||||| ||||  |||||||| ||| ||| ||    
T  6016505 cttgcataagttattttcataacaaaagataaaataaagttcaattgttttttaatattctacatgttgtttttataaactatattggagaacatataaa 6016406  T
Q  103 aa 104  Q
    ||    
T  6016405 aa 6016404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 10645378 - 10645304
Alignment:
Q  129 tgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaaca 202  Q
    ||||||||||  |||||||||||||||| ||| |||||||| || ||||||| || | || ||||||||||||||    
T  10645378 tgttttcataagttctcccaaacagtcttacaaaacttatgtcattagataacctcaaattagccaatccaaaca 10645304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 33416330 - 33416360
Alignment:
Q  10 ataagctatttttataacaaaagataaaata 40  Q
    |||||||||||||||||||||||||||||||    
T  33416330 ataagctatttttataacaaaagataaaata 33416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 12631557 - 12631621
Alignment:
Q  10 ataagctatttttataacaaaagataaaataactagattgtttttcaatatgctataagttgtttt 75  Q
    ||||||||||| |||||| ||||||||||| | ||||||||||| | ||| ||| |||||||||||    
T  12631557 ataagctatttctataaccaaagataaaat-attagattgttttcctataagctgtaagttgtttt 12631621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 30926581 - 30926674
Alignment:
Q  114 aaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggcc 206  Q
    |||||||| | ||||||||||||||  |||| |||||||||||||   || ||||||||  | ||||||| | ||||||||| |||||||||||    
T  30926581 aaaattgtcataagctgttttcataagttcttccaaacagtctcatcaaatttatgccagaaaataagctcaaataagccaaaccaaacaggcc 30926674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 34009496 - 34009447
Alignment:
Q  126 agctgttttcatacattctcccaaacagtctcacagaacttatgccaata 175  Q
    ||||||||||||| |||||||||||| |||||||| | | ||||||||||    
T  34009496 agctgttttcataaattctcccaaactgtctcacaaatcatatgccaata 34009447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 8147646 - 8147678
Alignment:
Q  9 cataagctatttttataacaaaagataaaataa 41  Q
    ||||||||||||||||| |||||||||||||||    
T  8147646 cataagctatttttatagcaaaagataaaataa 8147678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 35069585 - 35069525
Alignment:
Q  149 aacagtctcacagaacttatgccaatagataagct-atataagccaatccaaacaggccct 208  Q
    |||||||| ||| |||||||| || |||||||||| | |||||||||| ||||||||||||    
T  35069585 aacagtcttacaaaacttatgtcagtagataagctcaaataagccaatacaaacaggccct 35069525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35070764 - 35070724
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataa 41  Q
    ||||||| |||||||||||||||||  ||||||||||||||    
T  35070764 taagcttacataagctatttttatagaaaaagataaaataa 35070724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 24694 - 24748
Alignment:
Q  125 aagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagata 179  Q
    |||||||||| |||  |||||||||||||||||||| ||| ||||||||||||||    
T  24694 aagctgttttgataagttctcccaaacagtctcacaaaacatatgccaatagata 24748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 207715 - 207674
Alignment:
Q  1 taagcttgcataagctatttttataacaaaagataaaataac 42  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  207715 taagcttgcataagctattttagtaacaaaagataaaataac 207674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 63410 - 63379
Alignment:
Q  10 ataagctatttttataacaaaagataaaataa 41  Q
    ||||||||||||||||||||||||||||||||    
T  63410 ataagctatttttataacaaaagataaaataa 63379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 22278 - 22386
Alignment:
Q  99 tgaaaaaatcttataaaaattgttacaagctgttttcatacattctcccaaacagtctcacagaacttatgccaatagataagct-atataagccaatcc 197  Q
    |||||||| ||||  |||||||| | |||||||||  |||  || |||  ||||| |||||| ||||||||||| |||||||||| | |||||| |||||    
T  22278 tgaaaaaagcttacgaaaattgtcataagctgtttctataagttttccggaacaggctcacaaaacttatgccattagataagctaaaataagcaaatcc 22377  T
Q  198 aaacaggcc 206  Q
     ||||||||    
T  22378 taacaggcc 22386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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