View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_high_27 (Length: 239)
Name: NF5680_high_27
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 51254831 - 51254609
Alignment:
| Q |
1 |
ttgaaaagatgataatattcttaatctaaataaatataacttcttttgacgaataaataaatactataactttccttcnnnnnnntaataatactataac |
100 |
Q |
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| T |
51254831 |
ttgaaaagatgataatattcttaatctaaataaatataacttcttttgacgaataaataaatactataactttccttcaaaaaaataataatactataac |
51254732 |
T |
|
| Q |
101 |
ttatttagtgttatacatcaatttcatattataccaaatttaattttttattttgataaactaaacagtaaataaagtttctgttttaaattacttatga |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51254731 |
ttatttaatgttatacatcaatttcatattataccaaatttaattttttattttgataaactaaacaataaataaagtttctgttttaaattacttatga |
51254632 |
T |
|
| Q |
201 |
tataaactatgaatacttcaatt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
51254631 |
tataaactatgaatacttcaatt |
51254609 |
T |
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