View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5680_high_31 (Length: 209)
Name: NF5680_high_31
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_high_31 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 33818918 - 33818711
Alignment:
| Q |
1 |
tatcacaaattccatttccaaattccacacaaagtaacattatacct-gataccatattaatcaccaatcactataaaacagaataaagctaagaatata |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33818918 |
tatcacaaattccatttccaaattccacacaaagtaacattataccttgataccatattaatcaccaatcactataaaacagaataaagctaagaatata |
33818819 |
T |
|
| Q |
100 |
tcaaaaagcataaacttttcaatctacatatctatctctatctatgactatatctctattcatattccaaacggtccataaatcaaaacacatcaaaaac |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33818818 |
tcaaaaagcataaacttttgaatctacatatctatctctatctatgac--tatctctattcatattccaaacggtccataaatcaaaacacatcaaaaac |
33818721 |
T |
|
| Q |
200 |
aaacatgggt |
209 |
Q |
| |
|
|||||||||| |
|
|
| T |
33818720 |
aaacatgggt |
33818711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University