View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_high_7 (Length: 449)
Name: NF5680_high_7
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 430
Target Start/End: Complemental strand, 29838580 - 29838161
Alignment:
| Q |
11 |
cacagaagcacacagaagaaacaagatcatttgataatgtcaagttattacgcggttgtcaccatttatacacgatttgcaagcatttaccaatcatttt |
110 |
Q |
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| T |
29838580 |
cacagaagcacacagaagaaacaagatcatttgataatgtcaagttattacgcggttgtcaccatttatacgcgatttgcaagcatttaccaatcttttt |
29838481 |
T |
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| Q |
111 |
gtagtattacttggtacataccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29838480 |
gtagtattacttggtacataccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcat |
29838381 |
T |
|
| Q |
211 |
tgacatcaaatgcaaaaccgacaacacctcataccaagcattagacatggttgtttcctgtaaagagcgcacaaaagtaaccggaacaaattgatcagca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29838380 |
tgacatcaaatgcaaaaccgacaacacctcataccaagcattagacatggttgtttcctgtaaagagcgcacaaaagtaaccggaacaaattgatcagca |
29838281 |
T |
|
| Q |
311 |
ttcttctctataggaagtaaattaaactcaaaaatatgtatgaattttagaaggtacctctttttcatcttcttggttcatccaaacaaactgtactttg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29838280 |
ttcttctctataggaagtaaattaaactcaaaaatatgtatgaattttagaaggtacctctttttcatcttcttggttcatccaaacaaactgtactttg |
29838181 |
T |
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| Q |
411 |
tattgtaaatgacttcctac |
430 |
Q |
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| T |
29838180 |
tattgtaaatgacttcctac |
29838161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 270
Target Start/End: Original strand, 34628143 - 34628284
Alignment:
| Q |
129 |
taccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgacatcaaatgcaaaac |
228 |
Q |
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|||| ||||||||| | |||||||||| || |||||| ||||||||| || | |||||||||| ||| || ||||| ||| |||||| ||||| || |
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| T |
34628143 |
taccttctgatacttttggctgatgaccatcggtggatgttcttggaagaagtaataaattagcctgtgatagcaatagtgttgccatcaagtgcaagac |
34628242 |
T |
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| Q |
229 |
cgacaacacctcataccaagcattagacatggttgtttcctg |
270 |
Q |
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| T |
34628243 |
tgacaacacttcataccaagcattagacatggctgtttcctg |
34628284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 425
Target Start/End: Original strand, 34628391 - 34628451
Alignment:
| Q |
365 |
tacctctttttcatcttcttggttcatccaaacaaactgtactttgtattgtaaatgactt |
425 |
Q |
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||||||| |||||| || || |||||||||||||| |||||||||||||||||||||||| |
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| T |
34628391 |
tacctctgcttcatcctcctgattcatccaaacaaattgtactttgtattgtaaatgactt |
34628451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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