View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_high_9 (Length: 405)
Name: NF5680_high_9
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 941679 - 942064
Alignment:
| Q |
1 |
tccaaacgaaccatagtttaacagatgcttaaactagtaataagctaaaataaatcaacccaaacatttcctaatgcaacaacataacaacatcacattt |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
941679 |
tccaaacggaccatagtttaacagatgcttaaactagtaataagctaaaataaatcaacccaaacatttcctaatgcaacaacataacaacatcacattt |
941778 |
T |
|
| Q |
101 |
tacacagtcagtgcatagaaattcaattcacctgacgccaaaaggcaaggacgttagatttaacggcacaaccaggaggaccataatcataaaaaccagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
941779 |
tacacagtcagtgcatagaaattcaattcacctgacgccaaaaggcaaggacgttagatttaacggcacaaccaggaggaccataatcataaaaaccagc |
941878 |
T |
|
| Q |
201 |
aacaccacgataaatcttaaacgaaggaatataaaacaaacggcgttcaagcgtattgttaacagattgacgaaatgcttcacgcgaatcggaaccagag |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
941879 |
aacaccacgataaatcttaaacgaaggaatataaaacaaacggcgttcaagcgtattgttaacagattgacgaaatgcttcacgcgaatcggaaccagag |
941978 |
T |
|
| Q |
301 |
agaagcgattgaagcgatttctcaatggaagatttctcaagtttgagattgtttaacgcttgaacagcagcatcgatatcaggttt |
386 |
Q |
| |
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| T |
941979 |
agaagcgattgaagcgatttctcgatggaagatttctcaagtttgagattgtttaacgcttgaacagcagcatcgatatcaggttt |
942064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 96 - 295
Target Start/End: Original strand, 49825660 - 49825858
Alignment:
| Q |
96 |
cattttacacagtcagtgcatagaaattcaattcacctgacgccaaaaggcaaggacgttagatttaacggcacaaccaggaggaccataatcataaaaa |
195 |
Q |
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|||||||||| ||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49825660 |
cattttacactgtcagtgcataaaaactcaattcacctgacgccaaaaggagaggacattagatttaacggcacaagcaggaggaccataatcataaaaa |
49825759 |
T |
|
| Q |
196 |
ccagcaacaccacgataaatcttaaacgaaggaatataaaacaaacggcgttcaagcgtattgttaacagattgacgaaatgcttcacgcgaatcggaac |
295 |
Q |
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|
||||||||||||||||||||||||||| | | ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
49825760 |
ccagcaacaccacgataaatcttaaactacgaaatat-aaacaaacggcgttcaagcgcgttgttaacagattgacgaaaagcttcacgcgaatcggaac |
49825858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 49234908 - 49235061
Alignment:
| Q |
113 |
gcatagaaattcaattcacctgacgccaaaaggcaaggacgttagatttaacggcacaaccaggaggaccataatcataaaaaccagcaacaccacgata |
212 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49234908 |
gcatagaaactcaattcacctgacgccaaaagatgaggacgttagatttaacagcacaaccaggaggaccataatcataaaaaccagcaacaccgcgata |
49235007 |
T |
|
| Q |
213 |
aatcttaaacgaaggaatataaaacaaacggcgttcaagcgtattgttaacaga |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
49235008 |
aatcttaaacgaaggaatataaaacaaacggcgttcaagaatgttgttaacaga |
49235061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 157 - 293
Target Start/End: Original strand, 830314 - 830450
Alignment:
| Q |
157 |
gatttaacggcacaaccaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaacgaaggaatataaaacaaacggcgttcaagcgtat |
256 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||||||||||| ||||| | ||||| |||||||| ||||| ||||| | ||| |||||||| |||| |
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| T |
830314 |
gatttaaccgcgcaaccaggtggaccataatcataaaaaccagcgacaccgcagtaaattttaaacgacggaatgtaaaaaagacgacgttcaagtgtat |
830413 |
T |
|
| Q |
257 |
tgttaacagattgacgaaatgcttcacgcgaatcgga |
293 |
Q |
| |
|
| ||| |||||||||||||| ||||| |||||||| |
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| T |
830414 |
taacaacggattgacgaaatgcgtcacgagaatcgga |
830450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 386
Target Start/End: Original strand, 836454 - 836550
Alignment:
| Q |
290 |
cggaaccagagagaagcgattgaagcgatttctcaatggaagatttctcaagtttgagattgtttaacgcttgaacagcagcatcgatatcaggttt |
386 |
Q |
| |
|
||||| |||||||||| |||| ||| || || || ||||| |||||||||||||||||| ||| | ||||||||||| || ||||| |||||||| |
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| T |
836454 |
cggaagcagagagaagagattcaagtgacttttcgatggaggatttctcaagtttgagagcgttaagagcttgaacagcggcgtcgatgtcaggttt |
836550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 49825899 - 49825940
Alignment:
| Q |
345 |
gagattgtttaacgcttgaacagcagcatcgatatcaggttt |
386 |
Q |
| |
|
||||||||||| ||||||||||||| |||| ||||||||||| |
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|
| T |
49825899 |
gagattgtttagcgcttgaacagcaacatcaatatcaggttt |
49825940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 113 - 264
Target Start/End: Complemental strand, 50861762 - 50861611
Alignment:
| Q |
113 |
gcatagaaattcaattcacctgacgccaaaaggcaaggacgttagatttaacggcacaaccaggaggaccataatcataaaaaccagcaacaccacgata |
212 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
50861762 |
gcatagaaactcaattcacctgacgccaaaaggagaggacgttagatttaacggcacaaccaggaggaccataatcattaaaaccagcaacaccgcgata |
50861663 |
T |
|
| Q |
213 |
aatcttaaacgaaggaatataaaacaaacggcgttcaagcgtattgttaaca |
264 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
50861662 |
aatcttaaacgacggaatataaaacaaacggcgttcaagcgtgctgttaaca |
50861611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 150 - 269
Target Start/End: Complemental strand, 47934480 - 47934361
Alignment:
| Q |
150 |
gacgttagatttaacggcacaaccaggaggaccataatcataaaaaccagcaacaccacgataaatcttaaacgaaggaatataaaacaaacggcgttca |
249 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||| |
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|
| T |
47934480 |
gacgttagatttaacaacacaaccaggaggaccataatcataaaaaccagcaacaaagagataaatcttaaacaacgaaatataaaacaaacggcgttca |
47934381 |
T |
|
| Q |
250 |
agcgtattgttaacagattg |
269 |
Q |
| |
|
|||| |||| ||||||||| |
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|
| T |
47934380 |
agcgcattgcaaacagattg |
47934361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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