View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5680_low_10 (Length: 387)

Name: NF5680_low_10
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5680_low_10
NF5680_low_10
[»] chr8 (2 HSPs)
chr8 (1-387)||(30050332-30050718)
chr8 (1-387)||(30034328-30034711)


Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 30050718 - 30050332
Alignment:
Q  1 tggagaagcatagggagatgcaatgaagtagtagggtccaaattcatgtggaggcttgtatgtttgattactcattgaaaatccaaatctttgaacttct 100  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30050718 tggaaaagcataaggagatgcaatgaagtagtagggtccaaattcatgtggaggcttgtatgtttgattactcaatgaaaatccaaatctttgaacttct 30050619  T
Q  101 gacctattaaaatattgtcctgttggtggaaagagtgctagttgcatttgtagataatcatcatcattgaaaaaagggttttgtaaagaaactgaaccag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30050618 gacctattaaaatattgtcctgttggtggaaagagtgctagttgcatttgaagataatcatcaccattgaaaaaagggttttgtaaagaaactgaaccag 30050519  T
Q  201 gtgttaaacccaatttctcccataagctcttttcaagtgaatggaaaatagttatattagacaattctctaaacaaaggtcctctaaagtacaacattcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30050518 gtgttaaacccaatttctcccataagctcttttcaagtgaatggaaaatagttatattagacaattctctaaacaaaggtcctctaacgtacaacattcc 30050419  T
Q  301 ctgatatggataggcacatgcacaactttgtggactgagcttttgatccaggggacatgataatattcctccacaattagccaagct 387  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30050418 ttgatatggataggcacatgcacaactttgtggactgagcttttgatccaggggacatgataatattcctccacaattagccaagct 30050332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 30034711 - 30034328
Alignment:
Q  1 tggagaagcatagggagatgcaatgaagtagtagggtccaaattcatgtggaggcttgtatgtttgattactcattgaaaatccaaatctttgaacttct 100  Q
    |||| ||||||| ||| ||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||||||    
T  30034711 tggaaaagcataaggaaatgcaatgaagtaatagggtccaaattcgtgtggaggcttatatgtttgattactcaatgaaaatccaattctttgaacttct 30034612  T
Q  101 gacctattaaaatattgtcctgttggtggaaagagtgctagttgcatttgtagataatcatcatcattgaaaaaagggttttgtaaagaaactgaaccag 200  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||||||||||||||||||||||||||| ||||    
T  30034611 gtcctgttaaaatattgtcctgttggtggaaagagtgctagttgcatttgaagataatcgtcaccgttgaaaaaagggttttgtaaagaaactgagccag 30034512  T
Q  201 gtgttaaacccaatttctcccataagctcttttcaagtgaatggaaaatagttatattagacaattctctaaacaaaggtcctctaaagtacaacattcc 300  Q
    |||||||||| || ||| ||||||| ||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||    
T  30034511 gtgttaaacctaacttcacccataaactcatttcaagcgaatggaaaatagttatattcgacaattctctgaacaaaggtcctctgaagtagaacattcc 30034412  T
Q  301 ctgatatggataggcacatgcacaactttgtggactgagcttttgatccaggggacatgataatattcctccacaattagccaagct 387  Q
     |||||||||||||||||| |||| |||||||||||||| |||| |||  |||| ||||   |||||||||||||||| ||||||||    
T  30034411 ttgatatggataggcacattcacagctttgtggactgagttttttatcaggggggcatg---atattcctccacaatttgccaagct 30034328  T

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