View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_low_13 (Length: 332)
Name: NF5680_low_13
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_low_13 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 5 - 332
Target Start/End: Complemental strand, 18101448 - 18101121
Alignment:
| Q |
5 |
acaccacaaactgtcaaattctctgacacacttttcttcgaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgcatgctattattacc |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18101448 |
acaccacaaactgtcaaattctctgacacacttttcttcaaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgtatgctattattacc |
18101349 |
T |
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| Q |
105 |
caatccaatttatgtactaacaccaaacaaatttcccagcatctcacccactactccaaagtccaaactcaacacactattcaaactcaacataatacca |
204 |
Q |
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| T |
18101348 |
caatccaatttatgtactaacaccaaacaaatttcccagcatctcacccactactccaaagtccaaactcaacacaatattcaaactcaacataatacca |
18101249 |
T |
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| Q |
205 |
aaaaatgcaatcattaactttccttttagctttctttatattttttacatcaatttcaaacatttcacattcaaacacactcccttcatatcccactcca |
304 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18101248 |
aaaaatgcaatcattagctttccttttagctttctttatattttttacatcaatttcaaacatttcacattcaaacacactcccttcatatcccactcca |
18101149 |
T |
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| Q |
305 |
acagaatcccaaatatgcaaactagacc |
332 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
18101148 |
acagaatcccaaatatgcaaactagacc |
18101121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 5 - 332
Target Start/End: Complemental strand, 37859056 - 37858729
Alignment:
| Q |
5 |
acaccacaaactgtcaaattctctgacacacttttcttcgaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgcatgctattattacc |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37859056 |
acaccacaaactgtcaaattctctgacacacttttcttcaaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgtatgctattattacc |
37858957 |
T |
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| Q |
105 |
caatccaatttatgtactaacaccaaacaaatttcccagcatctcacccactactccaaagtccaaactcaacacactattcaaactcaacataatacca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37858956 |
caatccaatttatgtactaacaccaaacaaatttcccagcatctcacccactactccaaagtccaaactcaacacaatattcaaactcaacataatacca |
37858857 |
T |
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| Q |
205 |
aaaaatgcaatcattaactttccttttagctttctttatattttttacatcaatttcaaacatttcacattcaaacacactcccttcatatcccactcca |
304 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858856 |
aaaaatgcaatcattagctttccttttagctttctttatattttttacatcaatttcaaacatttcacattcaaacacactcccttcatatcccactcca |
37858757 |
T |
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| Q |
305 |
acagaatcccaaatatgcaaactagacc |
332 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
37858756 |
acagaatcccaaatatgcaaactagacc |
37858729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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