View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_low_15 (Length: 318)
Name: NF5680_low_15
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_low_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 9428502 - 9428202
Alignment:
| Q |
18 |
acgtcgaaacgagtaatagttgcgagtgaattaaggtagacacttctatgactataaactgctccttttggaattccagttgagcctgatgtgtaattca |
117 |
Q |
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| T |
9428502 |
acgtcgaaacgagtaatagttgcgagtgaattaaggtagacacttctatgactataaactgctccttttggaattccagttgagcctgatgtgtaattca |
9428403 |
T |
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| Q |
118 |
ctgatataggatcacattcatttctaggcattgaaatcttaaaatctttttgccccttttcaagaagttcatggtatattaaggtatcttgaggtatatc |
217 |
Q |
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| T |
9428402 |
ctgatataggatcacattcatttataggcattgaaatcttaaaatctttttgccccttttcaagaagttcatggtatattaaggtatcttgaggtatatc |
9428303 |
T |
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| Q |
218 |
tttcactagttggccatgatcttgtattaggacaataaggggtggcttgaaatttctttgggaaattatttttgatgctttgagtacagaatcaataaac |
317 |
Q |
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| T |
9428302 |
tttcactagttggccatgatcttgtattaggacaataaggggtggcttgaaatttctttgggaaattatttttgatgctttgagtacagaatcaataaac |
9428203 |
T |
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| Q |
318 |
t |
318 |
Q |
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| T |
9428202 |
t |
9428202 |
T |
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