View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_low_17 (Length: 286)
Name: NF5680_low_17
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_low_17 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 580434 - 580164
Alignment:
| Q |
16 |
caatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcactgcagcatgtcttcctctgatttgtcggc |
115 |
Q |
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| T |
580434 |
caatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcactgcagcatgtcgtcctctgatttgtcggc |
580335 |
T |
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| Q |
116 |
actttttcgtgaaaatatgatgtttgcaaatatttcagcaagctttttacgtgcgttgtcacggcgcctgtgagccggaattggcaggcatgggaagaga |
215 |
Q |
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| T |
580334 |
aatttttcgtgaagatatgatgtttgcaaatatttcagcaagctttttacgtgcgttgtcacggcgcctgtgagccggaattggcaggtatgggaagaga |
580235 |
T |
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| Q |
216 |
acactgattggaagcattccgttatcgagatcgtggaacaatgcagagacatcatcgaagagcttgtcacg |
286 |
Q |
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| T |
580234 |
acactgattggaagcattccgttatcgagatcgtggaacaatgcagagacatcatcgaagagcttgtcacg |
580164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 591993 - 592263
Alignment:
| Q |
16 |
caatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcactgcagcatgtcttcctctgatttgtcggc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
591993 |
caatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcactgcagcatgtcgttctctgatttgtcggc |
592092 |
T |
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| Q |
116 |
actttttcgtgaaaatatgatgtttgcaaatatttcagcaagctttttacgtgcgttgtcacggcgcctgtgagccggaattggcaggcatgggaagaga |
215 |
Q |
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| T |
592093 |
actttttcgtgaagatatgatgtttgcaaatatttcagcaagctttttacgtgcgttgtcacggcgcctgtgagccggaattggcaggcatgggaagaga |
592192 |
T |
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| Q |
216 |
acactgattggaagcattccgttatcgagatcgtggaacaatgcagagacatcatcgaagagcttgtcacg |
286 |
Q |
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| T |
592193 |
acactgattggaagcattccattatcgagatcgtggaacaatgcagagacatcatcgaagagcttgtcacg |
592263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 37434221 - 37434150
Alignment:
| Q |
16 |
caatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcact |
87 |
Q |
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|||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||| |
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| T |
37434221 |
caatgaggagtcctgtgacttcagcttcggttgtaaggcggttgtctttgtattttgagtcaatgaagcact |
37434150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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