View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_low_18 (Length: 283)
Name: NF5680_low_18
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 3876604 - 3876349
Alignment:
| Q |
13 |
aatatggaatgcaagtaaatcatccatttgtgggttttgtgttgagaggaatggaaaggatttagctgggttgtgtgatagaataagaatttgtgtgatg |
112 |
Q |
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| T |
3876604 |
aatatggaatgcaagtaaatcatccatttgtgtgttttgtgttgagaggaatggaaaggatttagctgggttgtgtgatagaataagaatttgtgtgatg |
3876505 |
T |
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| Q |
113 |
tggtagaatctatagtgtaaaagggtggtttgaatgagtatcttccatggatttcaatttcatgtaaagatcaataaatgtaatggatttcaatttcttt |
212 |
Q |
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| T |
3876504 |
tggtagaatctatagtgtaaaagggtggtttgaatgagtatcttccatggatttcaatttcatgtaaagatcaataaatgtaatggatttcaatttcttt |
3876405 |
T |
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| Q |
213 |
taactctttgaatatagtatgttgatgtcgatttatatgcatgaccatgctgtttg |
268 |
Q |
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| T |
3876404 |
taactctttgaatatagtatgttgatgtcgatttatatgcatgaccatgctgtttg |
3876349 |
T |
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