View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_low_26 (Length: 243)
Name: NF5680_low_26
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_low_26 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 30050000 - 30050226
Alignment:
| Q |
17 |
aactaagaagcaatgcactgaacaaaacactaaacatggatgacagcatttgtccccggttgaagcttgtggatttacaagagaataggatttcaacagt |
116 |
Q |
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| T |
30050000 |
aactaagaagcaatgcactgaacaaaacactaaacatggatgacagcatttatccccggttgaagcttgtggatttacaagagaataggatttcaacagt |
30050099 |
T |
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| Q |
117 |
cataatcggggaacattacaaaaatacattgatgtgagaccttttttgcgttccaatcaggcatactttggctccatttgacttccattattttttactt |
216 |
Q |
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| T |
30050100 |
cataatcggggaacattacaaaaatacattgatgtgagaccttttttgcgttctaatcaggcatactttggctccatttgacttccattattttttactt |
30050199 |
T |
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| Q |
217 |
ctcttttactgatgtagtgatttctat |
243 |
Q |
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| T |
30050200 |
ctcttttactgatgtagtgatttctat |
30050226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 30033807 - 30033946
Alignment:
| Q |
17 |
aactaagaagcaatgcactgaacaaaacactaaacatggatgacagcatttgtccccggttgaagcttgtggatttacaagagaataggatttcaacagt |
116 |
Q |
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|||||||| ||||||| ||||||| |||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||| |
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| T |
30033807 |
aactaagacacaatgcattgaacaatacactagacatgggtgacagcatttgtccccaattgcagcttgtggatttacaagacaaccagatttcaacagt |
30033906 |
T |
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| Q |
117 |
cataatcggggaacattacaaaaatacattgatgtgagac |
156 |
Q |
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| T |
30033907 |
aacactcagttcagaatacaaaaatacattgatgtgagac |
30033946 |
T |
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