View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_low_27 (Length: 239)
Name: NF5680_low_27
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 44771910 - 44772138
Alignment:
| Q |
2 |
gcatcaatgttgtggacaaagagggttaaagggtttgcagttcccgctaaataaaatcaataaggtttaatcaagaccaggcagaaaacaatgcaaatag |
101 |
Q |
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| T |
44771910 |
gcatcaatgttgtggacaaagagggttaaagggtttgcagttcccgctaaataaaattgataaggtttaatcaagaccaggcagaaaacaatgcaaatag |
44772009 |
T |
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| Q |
102 |
cagtcgtta---------aacgccacccctaattcgctacttctctaacaaactagggtaacaaccttaaacctatagactaaaataattcaaaccaaat |
192 |
Q |
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| T |
44772010 |
cagtcgttaacatagtttaacgccacacctaatttgctacttctttaacatactagggtaacaaccttacacctatagactaaaataattcaaaccaaat |
44772109 |
T |
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| Q |
193 |
actcactccattcaatccgaaactgtaac |
221 |
Q |
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| T |
44772110 |
actcactccattcaatccgaaactgtaac |
44772138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 44749960 - 44750070
Alignment:
| Q |
111 |
aacgccacccctaattcgctacttctctaacaaactagggtaacaaccttaaacctatagactaaaataattcaaaccaaatactcactccattcaatcc |
210 |
Q |
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|||||||| ||||||| ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44749960 |
aacgccacacctaatttgctacttctttaacatactagggtaacaaccttacacctatagactaaaataattcaaaccaaatactcactccattcaatcc |
44750059 |
T |
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| Q |
211 |
gaaactgtaac |
221 |
Q |
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| T |
44750060 |
gaaactgtaac |
44750070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 27094625 - 27094693
Alignment:
| Q |
139 |
aacaaactagggtaacaaccttaaacctatagactaaaataattcaaaccaaatactcactccattcaa |
207 |
Q |
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| T |
27094625 |
aacatactagggtaacaaccttaaacctgaagactaaaatactccaaaccaaacactaattccattcaa |
27094693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 13806071 - 13806139
Alignment:
| Q |
139 |
aacaaactagggtaacaaccttaaacctatagactaaaataattcaaaccaaatactcactccattcaa |
207 |
Q |
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|||| |||||||||||||||||||||| ||||||||||| | ||||||||| ||| | ||||||||| |
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| T |
13806071 |
aacatactagggtaacaaccttaaaccagaagactaaaatactccaaaccaaacactaattccattcaa |
13806139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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