View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_low_29 (Length: 238)
Name: NF5680_low_29
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34317691 - 34317912
Alignment:
| Q |
1 |
aacaaaaggaaggtgcaatcgacagctttggatattcagacgggacattaaaaattcaaatggatactacgagtcatgaaaaaagaagagcttcaactag |
100 |
Q |
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| T |
34317691 |
aacaaaaggaaggtgcaatcgacagctttggatattcagacgggacattaaaaattcaaatggatactacgagtcatgaaaaaagaagagcttcaactag |
34317790 |
T |
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| Q |
101 |
tgacattcctaatccaaagataagaaagagttcagagataggtcttaaccaatctcttgaatctgcagaatcagaagcaaaccatacagtatttgactcc |
200 |
Q |
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| T |
34317791 |
tgacattcctaatccaaagataagaaagagttcagagataggtcttaaccaatctcttgaatctgcagaatcagaagcaaaccatacagtatttgactcc |
34317890 |
T |
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| Q |
201 |
gtcataccaacaaagtactctt |
222 |
Q |
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|||||||||||| ||||||||| |
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| T |
34317891 |
gtcataccaacacagtactctt |
34317912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 26375824 - 26375939
Alignment:
| Q |
107 |
tcctaatccaaagataagaaagagttcagagataggtcttaaccaatctcttgaatctgcagaatcagaagcaaaccatacagtatttgactccgtcata |
206 |
Q |
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| T |
26375824 |
tcctgatccaatgataagaaaaacattagagacaggtcttaaccaatctcttgagtatgcggaatcagaagcaaaccatacaatttttgattccaccata |
26375923 |
T |
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| Q |
207 |
ccaacaaagtactctt |
222 |
Q |
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|||||| |||| |||| |
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| T |
26375924 |
ccaacacagtattctt |
26375939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 34327754 - 34327849
Alignment:
| Q |
99 |
agtgacattcctaatccaaagataagaaagagttcagagataggtcttaaccaatctcttgaatctgcagaatcagaagcaaaccatacagtattt |
194 |
Q |
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| T |
34327754 |
agtgacattcttgatccaaagaaaagatagagttcacagataggttttaatcaaccttttgaatatgtagattcagaagcaaaccatacagtattt |
34327849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 34322293 - 34322380
Alignment:
| Q |
99 |
agtgacattcctaatccaaagataagaaagagttcagagataggtcttaaccaatctcttgaatctgcagaatcagaagcaaaccatac |
187 |
Q |
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| T |
34322293 |
agtgacattgttgatccgaagataagaaagagttcgcagataggtcttaatcaaccttttgaatct-aagattcagaagcaaaccatac |
34322380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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