View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_low_3 (Length: 490)
Name: NF5680_low_3
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 212 - 486
Target Start/End: Original strand, 10011437 - 10011701
Alignment:
| Q |
212 |
ggtgttcattgaatcgatccaaaacatgtcgtaaatttcgttgttgatgaaggttgatgaaagattctggcggagaacatgcagctatggagatggcatt |
311 |
Q |
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| T |
10011437 |
ggtgatcattgaatcgatccaaaacatgtcgtaaatttcgttgttg----------atgaaagattctggcggagaacatgcagctatggagatggcatt |
10011526 |
T |
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| Q |
312 |
gaagagttggatggatactgtgttgttgaaccaagggaagagagcactgtgattcctaaagttagcatgggaagaagagctagaatnnnnnnngttatga |
411 |
Q |
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| T |
10011527 |
gaagagttggatggatactgtgctgttgaaccaagggaagagagcactgtgattcctaaagttagcatgggaagaagagctagaataaaaaaagttatga |
10011626 |
T |
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| Q |
412 |
tagatgctggtttagtgtgtgaacatgcgtgggaaatagatcagctgcatgttttccatatagtacaccaaggta |
486 |
Q |
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| T |
10011627 |
tagatgctggtttagtgtgtgaacatgcgtgggaaatagatcagctgcatgttttccatatagtacaccaaggta |
10011701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 36 - 220
Target Start/End: Original strand, 10011225 - 10011409
Alignment:
| Q |
36 |
tttcgttaaaaattatctttttgttctatattctttctcgtttctgaagcaaaagcgnnnnnnnnnnnnnnnnnnncgaagggagacataaatgatttag |
135 |
Q |
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| T |
10011225 |
tttccttaaaaattgtctttttgttctatattctttctcgtttctgaagcagaagagttatttttctttcctttttcgaagggagacataaatgatttag |
10011324 |
T |
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| Q |
136 |
aagagttggacatcaaattcatatcagtnnnnnnntagaacaccaccacagagcttggatttggacaacaaagaggggtgttcat |
220 |
Q |
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| T |
10011325 |
aagagttggacatcaaattcatatcagtaaaaaaatagaacaccaccacagagcttggatttggacaacaaagaggggtgttcat |
10011409 |
T |
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