View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_low_30 (Length: 237)
Name: NF5680_low_30
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 9667759 - 9667544
Alignment:
| Q |
1 |
ttcaaacactagtttcttgccactctctttctctgtttagacacttcaagctatgactcaagctaattttccatgtacgatgaagccaattgaagctcgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9667759 |
ttcaaacactagtttcttgccactctctttctctgtttagacacttcaagctatgactcaagctaattttccatgtacgatgaagcctattgaagctc-- |
9667662 |
T |
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| Q |
101 |
tgaagctcaatttagacactctctttccctggttagatagttcaacctctcttatcatctaattatgcaacccatatatttagacacccttttatttttc |
200 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9667661 |
--------aatttagacactctctttcccaggttagacagttcaacctctcttatcatctaattatgcaacccatatatttagacacccttttatttttc |
9667570 |
T |
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| Q |
201 |
--atacacatatccaacaccttattt |
224 |
Q |
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|||||||||| ||||||||||||| |
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| T |
9667569 |
atatacacatattcaacaccttattt |
9667544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 9645096 - 9644973
Alignment:
| Q |
1 |
ttcaaacactagtttcttgccactctctttctctgtttagacacttcaagctatgactcaagctaattttccatgtacgatgaagccaattgaagctcg- |
99 |
Q |
| |
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|||| |||||| ||||| |||||||||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||| |||||| |||| |
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| T |
9645096 |
ttcagacactaatttctcgccactctctttctctgtttagacactttaagctatgactcaaactcaatttccatgtacgatgaagcccattgaaactcgt |
9644997 |
T |
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| Q |
100 |
---ttgaagctcaatttagacact |
120 |
Q |
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||||||||||||||||||||| |
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| T |
9644996 |
aacttgaagctcaatttagacact |
9644973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 9653807 - 9653684
Alignment:
| Q |
1 |
ttcaaacactagtttcttgccactctctttctctgtttagacacttcaagctatgactcaagctaattttccatgtacgatgaagccaattgaagctcg- |
99 |
Q |
| |
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|||| |||||||||||| |||||||| |||||||||||||| ||| |||||||||||||| || | |||||||||||||||||||| || ||| |||| |
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| T |
9653807 |
ttcagacactagtttctcgccactct--ttctctgtttagaccctttaagctatgactcaaactcaatttccatgtacgatgaagcccatagaaactcgt |
9653710 |
T |
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| Q |
100 |
-----ttgaagctcaatttagacact |
120 |
Q |
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||||||||||||||||||||| |
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| T |
9653709 |
aacttttgaagctcaatttagacact |
9653684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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