View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_low_31 (Length: 236)
Name: NF5680_low_31
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 44629833 - 44629627
Alignment:
| Q |
18 |
ataggcacataataacgcatcaaagcttctgtttctttttgtatttcgct---gcctctnnnnnnnttatgctaatctctctcttctggatttcattact |
114 |
Q |
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| T |
44629833 |
ataggcacataataacgcatcaaagcttctgtttctttttgtatttcgctactgcctctaaaaaaaatatgctaatctctctcttctggatttcattact |
44629734 |
T |
|
| Q |
115 |
ctgtatcattttagatttcatcttccaaagcaagtcaaacagaatactttagtatatatttcatgaatcaaataacactttaaaacaagccaagccaccg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44629733 |
ctgtatcattttagatttcatcttccaaagcaagtcaaaaagaatactttagtatatatttcatgaatcaattaacactttaaaacaagccaagccaccg |
44629634 |
T |
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| Q |
215 |
tcctttg |
221 |
Q |
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||||||| |
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| T |
44629633 |
tcctttg |
44629627 |
T |
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