View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_low_33 (Length: 203)
Name: NF5680_low_33
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 44749899 - 44750070
Alignment:
| Q |
14 |
gcacagatcaaattaactaaaatcttttatagttccactgaaaatccaccaaacatagtttaacgccacacctaatttgctacttctctaacatactagg |
113 |
Q |
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| T |
44749899 |
gcacagatcaaattaactaaaatcttttataattccactgaaaatccaccaaacatagtttaacgccacacctaatttgctacttctttaacatactagg |
44749998 |
T |
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| Q |
114 |
gtaacaaccttaaacctatagactaaaataattcaaaccaaatactcactccattcaatccgaaactgtaac |
185 |
Q |
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| T |
44749999 |
gtaacaaccttacacctatagactaaaataattcaaaccaaatactcactccattcaatccgaaactgtaac |
44750070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 44772018 - 44772138
Alignment:
| Q |
65 |
aacatagtttaacgccacacctaatttgctacttctctaacatactagggtaacaaccttaaacctatagactaaaataattcaaaccaaatactcactc |
164 |
Q |
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| T |
44772018 |
aacatagtttaacgccacacctaatttgctacttctttaacatactagggtaacaaccttacacctatagactaaaataattcaaaccaaatactcactc |
44772117 |
T |
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| Q |
165 |
cattcaatccgaaactgtaac |
185 |
Q |
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| T |
44772118 |
cattcaatccgaaactgtaac |
44772138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 44750220 - 44750262
Alignment:
| Q |
24 |
aattaactaaaatcttttatagttccactgaaaatccaccaaa |
66 |
Q |
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| T |
44750220 |
aattaaccaaaatcttttataattccactgaaaatccaccaaa |
44750262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 44772288 - 44772330
Alignment:
| Q |
24 |
aattaactaaaatcttttatagttccactgaaaatccaccaaa |
66 |
Q |
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| T |
44772288 |
aattaaccaaaatcttttataattccactgaaaatccaccaaa |
44772330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 27094625 - 27094693
Alignment:
| Q |
103 |
aacatactagggtaacaaccttaaacctatagactaaaataattcaaaccaaatactcactccattcaa |
171 |
Q |
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| T |
27094625 |
aacatactagggtaacaaccttaaacctgaagactaaaatactccaaaccaaacactaattccattcaa |
27094693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 13806071 - 13806139
Alignment:
| Q |
103 |
aacatactagggtaacaaccttaaacctatagactaaaataattcaaaccaaatactcactccattcaa |
171 |
Q |
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| T |
13806071 |
aacatactagggtaacaaccttaaaccagaagactaaaatactccaaaccaaacactaattccattcaa |
13806139 |
T |
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