View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_low_5 (Length: 465)
Name: NF5680_low_5
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Complemental strand, 3045450 - 3045020
Alignment:
| Q |
18 |
attccttgtccaaatcatttgttatttatatctgtcagttagcaacattctgagatactatgccactgtactttccactatcatttttgctgcacagaaa |
117 |
Q |
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| T |
3045450 |
attccttgtccaaatcatttgttatttatatctgtcagttagcaacattctgagatactatgccactgtactttccactatcatttttgctgcagaaaaa |
3045351 |
T |
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| Q |
118 |
aagtagtagtggatggtcataaaaaagtaatggtggaagtagaacaaaagaactgaacaagtcttgttttcatatg--aaaatggtaaaatctaagactc |
215 |
Q |
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| T |
3045350 |
aagtagtagtgaatggtcataaaaaagtaatggtggaagtagaacaaaagaactgaacaagtcttgttttcatatgaaaaaatggaaaaatctaagactc |
3045251 |
T |
|
| Q |
216 |
attcttttcctacaaactcaagacttaccttactttacaagtaactgagttcaatgatggttttcttttctgaagcaacaaggtatcaatcactctcaca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
3045250 |
attcttttcctacaaactcaagacttaccttactttacaagtaactgagttcaatgatggttttctgttctgaagcaacaaggtatgaatcactctcaca |
3045151 |
T |
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| Q |
316 |
tatttccactgttacatttttctttcatgatggtctatgtagcattagcacatgcgattatttaaatatttttaaaattattaccggtgtcaatgtgtcg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||| ||||||||||||||||||||| ||| |
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| T |
3045150 |
tatttccactgttacatttttctttcatgatggtctatgtagcactaacacatgcaattatttaaat-tttttcaaattattaccggtgtcaatgcatcg |
3045052 |
T |
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| Q |
416 |
tagctagtgatatttctcgccgcttcatagat |
447 |
Q |
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| T |
3045051 |
tagctagtgatatgtgtcggcgcttcatagat |
3045020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 3017176 - 3017125
Alignment:
| Q |
18 |
attccttgtccaaatcatttgttatttatatctgtcagttagcaacattctg |
69 |
Q |
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| T |
3017176 |
attccttggccaaatcattggttatttatatctgtcagttagcaacactctg |
3017125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 339
Target Start/End: Complemental strand, 3016993 - 3016859
Alignment:
| Q |
202 |
aaaatctaagactcattcttttcctacaaactcaagacttaccttactttacaagtaactgagttcaatgatggttttcttttctgaagcaacaaggtat |
301 |
Q |
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||||||||||||||||||||||||| ||| ||||| | || | | ||||| |||||| ||||| || |||||||||| | |||||||||||||||| |
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| T |
3016993 |
aaaatctaagactcattcttttcctgcaagttcaaggccaacat-agtttacttgtaacttggttca-tgttggttttcttgtgtgaagcaacaaggtat |
3016896 |
T |
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| Q |
302 |
caatcactctcacatatttccactgttacatttttctt |
339 |
Q |
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| T |
3016895 |
gaatcactctcatgtactt-cactgtgacatttttctt |
3016859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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