View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5680_low_6 (Length: 461)
Name: NF5680_low_6
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5680_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 4505762 - 4505335
Alignment:
| Q |
19 |
attaggtttcatgttttttatgtcttgattgatttcttcctctggaaactccatccctaataaattcttcaaattatcaatgattctaccttgaacaact |
118 |
Q |
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| T |
4505762 |
attaggtttcatgttttttatgtcttgattgattttttcctctggaaactccatccctaataaattcttcaaattatcaatgattctcccttgaacaact |
4505663 |
T |
|
| Q |
119 |
tgagtagactccttagtattatttggattgcttgaagtgaagatgtcttgaaaatgtctgattagtatgttcctaatttccacaacattagtagcaacac |
218 |
Q |
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| T |
4505662 |
tgagtagactccttagtattatttggattacttgaagtgaagatgtcttgaaaatgtctgatcagtatgttcctaatttccacaacattagtagcaacac |
4505563 |
T |
|
| Q |
219 |
cattagcatcattgtgaatcttaattttacttttattatgtctttgcatgactttgatgagtatttttaacaccatttttaagccaagatgattttgctc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4505562 |
cattagcatcattgtgaatcttaattttacttttattatgtctttgcatgactttgatgagtatttttaacaccatttttaagccaagatgattttgctc |
4505463 |
T |
|
| Q |
319 |
tttgactccatcagtttcgtgatccaaaatattatccatacgagttttgaaatcttcggctctatcaattacctcttcagtttggattttagtgtgaagc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4505462 |
tttgactccatcagtttcgtgatccaaaatattatccatacgggttttgaaatcttcggctctatcaattacctcttcagtttggattttagtgtgaaga |
4505363 |
T |
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| Q |
419 |
ttactaagttgctttgagtctttctgat |
446 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
4505362 |
ttactaagttgctttgagtctttctgat |
4505335 |
T |
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