View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5680_low_8 (Length: 426)

Name: NF5680_low_8
Description: NF5680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5680_low_8
NF5680_low_8
[»] chr8 (4 HSPs)
chr8 (111-406)||(22687607-22687921)
chr8 (262-325)||(11550278-11550340)
chr8 (262-325)||(11545590-11545653)
chr8 (281-342)||(11562916-11562980)
[»] chr5 (3 HSPs)
chr5 (109-254)||(27472180-27472325)
chr5 (302-406)||(27472321-27472425)
chr5 (28-85)||(33079013-33079070)
[»] chr3 (3 HSPs)
chr3 (109-202)||(24263481-24263574)
chr3 (215-346)||(19859586-19859716)
chr3 (111-164)||(19859478-19859531)
[»] chr6 (1 HSPs)
chr6 (281-317)||(34407717-34407753)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 111 - 406
Target Start/End: Complemental strand, 22687921 - 22687607
Alignment:
Q  111 cttttacttgattattacatagaaacatagttatcaattggtactttcttgtaggaatgtagtcagctatttagaacagtggatctttccttcatatcaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22687921 cttttacttgattattacatagaaacatagttatcaattggtactttcttgtaggaatgtagtcagctatttagaacagtggatctttccttcatatcaa 22687822  T
Q  211 att------------------gatatctgaatttttatcaatgaaattctaatc-aagtgctaaattattttgttccagttaggtaagttaaaacattac 291  Q
     ||                  ||||||||||||||| ||||||||| ||||||| |||||| ||||||| |||||| |||| ||||||| ||||||| |     
T  22687821 ttttattttacatgaaagtgtgatatctgaatttttttcaatgaaaatctaatccaagtgcaaaattatattgttctagttgggtaagtcaaaacatcat 22687722  T
Q  292 caatttcatttgctatagtaaactctattaatggcattgaaagtaattttaaattgacattacacactgttaaacctatgaaactgttgtaagcacgtta 391  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  22687721 taatttcatttgctatagtaaactctattaatggcattgaaagtaattttaaattgacattacacactgttaaacctatgaaactgttataagcatgtta 22687622  T
Q  392 gaacatagtgactgc 406  Q
    ||| |||||||||||    
T  22687621 gaaaatagtgactgc 22687607  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 325
Target Start/End: Original strand, 11550278 - 11550340
Alignment:
Q  262 ttgttccagttaggtaagttaaaacattaccaatttcatttgctatagtaaactctattaatgg 325  Q
    |||||||||||||| || | |||||||||||| ||||||||| |||||||||||||||||||||    
T  11550278 ttgttccagttagggaact-aaaacattaccactttcatttgttatagtaaactctattaatgg 11550340  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 325
Target Start/End: Original strand, 11545590 - 11545653
Alignment:
Q  262 ttgttccagttaggtaagttaaaacattaccaatttcatttgctatagtaaactctattaatgg 325  Q
    ||||||||||| || ||  |||||||| |||| ||||||||| ||||||||| |||||||||||    
T  11545590 ttgttccagttgggaaatctaaaacatcaccactttcatttgttatagtaaaatctattaatgg 11545653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 342
Target Start/End: Complemental strand, 11562980 - 11562916
Alignment:
Q  281 taaaacattaccaatttcatttgctatagtaaactctattaa---tggcattgaaagtaatttta 342  Q
    |||||||| |||| ||||||||| ||||||||| ||||||||   ||||||||||||| ||||||    
T  11562980 taaaacatcaccactttcatttgttatagtaaaatctattaatggtggcattgaaagttatttta 11562916  T

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Target: chr5 (Bit Score: 126; Significance: 8e-65; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 109 - 254
Target Start/End: Original strand, 27472180 - 27472325
Alignment:
Q  109 tgcttttacttgattattacatagaaacatagttatcaattggtactttcttgtaggaatgtagtcagctatttagaacagtggatctttccttcatatc 208  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27472180 tgcttttacttgattattacataggaacatagttatcaattggtaccttcttataggaatgtagtcagctatttagaacagtggatctttccttcatatc 27472279  T
Q  209 aaattgatatctgaatttttatcaatgaaattctaatcaagtgcta 254  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||    
T  27472280 aaatcgatatctgaatttttatcaatgaaattttaatcaagtgcta 27472325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 27472321 - 27472425
Alignment:
Q  302 tgctatagtaaactctattaatggcattgaaagtaattttaaattgacattacacactgttaaacctatgaaactgttgtaagcacgttagaacatagtg 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||    
T  27472321 tgctatagtaaactctattaatggcattgaaagtaattttaaattgacattacacactgttaaacttatgaaaccgttataagcacgttagaacatagtg 27472420  T
Q  402 actgc 406  Q
    |||||    
T  27472421 actgc 27472425  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 33079070 - 33079013
Alignment:
Q  28 caatgaatgattattctcttgttcagcagttatttatggagcttttatattcatgttc 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33079070 caatgaatgattattctcttgttcagcagttatttatggagcttttatattcatgttc 33079013  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 202
Target Start/End: Original strand, 24263481 - 24263574
Alignment:
Q  109 tgcttttacttgattattacatagaaacatagttatcaattggtactttcttgtaggaatgtagtcagctatttagaacagtggatctttcctt 202  Q
    ||||||||||| |||| ||  |||||||| ||||||||||||||||   |||| || |||||||  | |||||||||||| |||||||||||||    
T  24263481 tgcttttactttattactatgtagaaacacagttatcaattggtaccaacttgaagaaatgtagctaactatttagaacactggatctttcctt 24263574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 346
Target Start/End: Original strand, 19859586 - 19859716
Alignment:
Q  215 atatctgaatttttatcaatgaaattctaatcaagtgctaaattattttgttccagttaggtaagttaaaacattaccaatttcatttgctatagtaaac 314  Q
    |||||||||||| ||||||| |||||   |||| ||||| | |||  |||||||| || || ||| || ||||| |||| |||||||| |||| ||||||    
T  19859586 atatctgaatttatatcaattaaattgatatcatgtgctgacttacattgttccatttgggaaagctagaacataaccattttcattttctat-gtaaac 19859684  T
Q  315 tctattaatggcattgaaagtaattttaaatt 346  Q
    || |||| ||||||||||||| |||| |||||    
T  19859685 tccattagtggcattgaaagtgatttaaaatt 19859716  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 19859478 - 19859531
Alignment:
Q  111 cttttacttgattattacatagaaacatagttatcaattggtactttcttgtag 164  Q
    |||||||||||||||| |||||||| |||||||||| ||||||| | |||||||    
T  19859478 cttttacttgattattgcatagaaatatagttatcagttggtacctgcttgtag 19859531  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 34407753 - 34407717
Alignment:
Q  281 taaaacattaccaatttcatttgctatagtaaactct 317  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  34407753 taaaacattaccaatttcatttgccatagtgaactct 34407717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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