View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5681-Insertion-1 (Length: 389)
Name: NF5681-Insertion-1
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5681-Insertion-1 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 21509743 - 21509361
Alignment:
| Q |
7 |
aaattcgtcattcataccttaggtgatggatgacgcgggtctcgcatgggcgagggaggcttcaccgctccatttttcctagtaattctttcatgaaatt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21509743 |
aaattcgtcattcataccttaggtgatggatgacgcgggtctcgcatgggcgagggaggcttcactgctccatttttcctagtaattctttcatgaaatt |
21509644 |
T |
|
| Q |
107 |
taacatcttcctgaaaactattttctttctgttcaacagaatttttagaaaatcctgttttttcattaagactgaagtcattgagattataatcaccctt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21509643 |
taacatcttcctgaaaactattttctttctgttcaacagaatttttagaaaatcctgttttttcattaagactgaagtcattgagattataatcaccctt |
21509544 |
T |
|
| Q |
207 |
gatagctttacttatgaaatgcaatgcctttgtttcaaatgccatcctttcatgaacattactactgcttctttgaatagaactaggatttgtaattgtt |
306 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21509543 |
gattgctttacttatgaaatgcaatgcctttgtttcaaatgccatcctttcatgaacattactactgcttctttgaatagaactaggatttgtaattgtt |
21509444 |
T |
|
| Q |
307 |
gaagttgataaatgattgttagaattgctcataaaattcccttggttctgtatttttgacttagattcgttggtgatttcttg |
389 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21509443 |
gaagttgataaacgattgttagaattgctcataaaattcccttggttctgtatttttgacttagattcgttggtgatttcttg |
21509361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University