View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5681-Insertion-4 (Length: 923)

Name: NF5681-Insertion-4
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5681-Insertion-4
NF5681-Insertion-4
[»] chr5 (9 HSPs)
chr5 (498-903)||(37625207-37625588)
chr5 (499-737)||(29655817-29656061)
chr5 (498-903)||(37801745-37802126)
chr5 (15-159)||(29655333-29655477)
chr5 (156-308)||(29655524-29655678)
chr5 (737-842)||(29656991-29657094)
chr5 (358-448)||(37625098-37625189)
chr5 (358-448)||(37801636-37801727)
chr5 (358-421)||(29655723-29655786)
[»] chr1 (4 HSPs)
chr1 (226-308)||(20728375-20728457)
chr1 (825-916)||(20729473-20729564)
chr1 (39-125)||(20727935-20728021)
chr1 (724-782)||(20729355-20729413)
[»] chr3 (3 HSPs)
chr3 (226-308)||(50935265-50935346)
chr3 (845-916)||(50934662-50934732)
chr3 (701-783)||(50934837-50934919)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-99; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 498 - 903
Target Start/End: Original strand, 37625207 - 37625588
Alignment:
Q  498 gattctattgaatataattatccaaaatccaaatgaaaggatttactttagaacaaaacttcgattccatttcttaatcgaggctactgaaaggaatctt 597  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  37625207 gattctattgaatataattatccaaaatcgaaatgaaaggatttactttagaacaaaacttcgattccatttcctaatcggggctattgaaaggaatctt 37625306  T
Q  598 atttggatgatgagttagagactggggtttactaaatgaatatttactagttaaactatttctgggaagggg-ctagcaaaatgaatcaatcctattggg 696  Q
     |||||| |||||||||||||                    |||||| |||| |||||||||||||| |||| |||||||| ||||||    || ||| |    
T  37625307 gtttggaagatgagttagagag-------------------atttaccagttcaactatttctgggaggggggctagcaaagtgaatc----ctgttgcg 37625383  T
Q  697 aagtacattctcatcattttcactacttctttatactctcatgcttcttccttatgtttattccatgtaatttactgtgaagttgttccaaattaatgtg 796  Q
    || ||||||||| ||||||||| ||| | ||||| ||||||||||||||||||||||||||||||| ||| ||| |||||||||||| |||| |||||||    
T  37625384 aattacattctcttcattttcattacatttttattctctcatgcttcttccttatgtttattccatctaacttattgtgaagttgtttcaaactaatgtg 37625483  T
Q  797 cttgaatggtattttttagtaacatatcaatagtatctgtttgctcatttttctgcagttggtgctaatggatctggtaaaacaaattttttccatggta 896  Q
    | |  ||||||||| ||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  37625484 ccttgatggtatttcttagtaacat--caatagtatctgtttgctcatttttttgcagttggtgctaatggatctggcaaaacaatttttttccatggta 37625581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 499 - 737
Target Start/End: Original strand, 29655817 - 29656061
Alignment:
Q  499 attctattgaatataattatccaaaatccaaatgaaaggatttactttagaacaaaacttcgattccatttcttaatcgaggctactgaaaggaatct-- 596  Q
    ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  29655817 attctattcgatatgattatccaaaatccaaatgaaaggatttactttagaacaaaacttcgattccatttcttaatcgaggctactgaaaggaatcaga 29655916  T
Q  597 ----tatttggatgatgagttagagactggggtttactaaatgaatatttactagttaaactatttctgggaaggggctagcaaaatgaatcaatcctat 692  Q
        |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||  |||||    
T  29655917 atcctatttggatgatgagttagagagtggggtttactaaacgaatatttactagttaaactatttctgggaaagggctagcaaactgaatcatacctat 29656016  T
Q  693 tgggaagtacattctcatcattttcactacttctttatactctca 737  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  29656017 tgggaagtacattctcatcatttgcactacttctttatactctca 29656061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 498 - 903
Target Start/End: Original strand, 37801745 - 37802126
Alignment:
Q  498 gattctattgaatataattatccaaaatccaaatgaaaggatttactttagaacaaaacttcgattccatttcttaatcgaggctactgaaaggaatctt 597  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| |||||||||||||    
T  37801745 gattctattgaatataattatccaaaatcgaaatgaaaggatttactttagaacaaaactttgattccatttcctaatcggggctattgaaaggaatctt 37801844  T
Q  598 atttggatgatgagttagagactggggtttactaaatgaatatttactagttaaactatttctgggaagggg-ctagcaaaatgaatcaatcctattggg 696  Q
     |||||| |||||||||||||                    |||||| |||| | |||||||||||| |||| |||||||| ||||||    || ||| |    
T  37801845 gtttggaagatgagttagagag-------------------atttaccagttcagctatttctgggaggggggctagcaaagtgaatc----ctgttgcg 37801921  T
Q  697 aagtacattctcatcattttcactacttctttatactctcatgcttcttccttatgtttattccatgtaatttactgtgaagttgttccaaattaatgtg 796  Q
    || ||||||||| ||||||||| ||| | ||||| ||||||||||||||||||||||||||||||| ||| ||| |||||||||||| |||| |||||||    
T  37801922 aattacattctcttcattttcattacatttttattctctcatgcttcttccttatgtttattccatctaacttattgtgaagttgtttcaaactaatgtg 37802021  T
Q  797 cttgaatggtattttttagtaacatatcaatagtatctgtttgctcatttttctgcagttggtgctaatggatctggtaaaacaaattttttccatggta 896  Q
    | |  ||||||||| ||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  37802022 ccttgatggtatttcttagtaacat--caatagtatctgtttgctcatttttttgcagttggtgctaatggatctggcaaaacaatttttttccatggta 37802119  T

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Target: chr5; HSP #4
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 29655333 - 29655477
Alignment:
Q  15 tgcttatcgaaattttttgattgattttgtaggcttggttatgatagtttcaacatgttcattaaacaggtaattgtgttttaaaatgctttgatacatt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| |||||||    
T  29655333 tgcttatcgaaattttttgattgattttgtaggcttggttatgatagtttcaacatgttcattaaacaggtaattgtgttttgaactacttttatacatt 29655432  T
Q  115 tatttatttttcatttgtatttgtgtctactgttatagtaacatt 159  Q
    || ||||||||||||||| |||| |||||||||||||||||||||    
T  29655433 tacttatttttcatttgtttttgcgtctactgttatagtaacatt 29655477  T

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Target: chr5; HSP #5
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 156 - 308
Target Start/End: Original strand, 29655524 - 29655678
Alignment:
Q  156 catttata-cgttgctttttggagttgattattcactaaatgaacttttgatgcacttgt-gtannnnnnnnaggttgtgattgaaggtttcaagagtta 253  Q
    |||||||| |||| ||||||||||||||||| |  ||||||||| ||||||||||||| | |||        ||||||||||||||||||||||||||||    
T  29655524 catttatatcgttactttttggagttgattacttgctaaatgaatttttgatgcactttttgtattttttttaggttgtgattgaaggtttcaagagtta 29655623  T
Q  254 ccgagagcatattgccacagaggatttcagtcctaaagttaactgtgttggtaat 308  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  29655624 ccgagagcaaattgccacggaggatttcagtcctaaagttaactgtgttggtaat 29655678  T

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Target: chr5; HSP #6
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 737 - 842
Target Start/End: Original strand, 29656991 - 29657094
Alignment:
Q  737 atgcttcttccttatgtttattccatgtaatttactgtgaagttgttccaaattaatgtgcttgaatggtattttttagtaacatatcaatagtatctgt 836  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||||  |||||||||||||||    
T  29656991 atgcttcttccttgtgtttattccatgtaatttactgtgtagttgtttcaaattaatgtgcctgaatggtatttcttagtaac--atcaatagtatctgt 29657088  T
Q  837 ttgctc 842  Q
    ||||||    
T  29657089 ttgctc 29657094  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 358 - 448
Target Start/End: Original strand, 37625098 - 37625189
Alignment:
Q  358 gtaggaacgattactagtattttgttgagaagtgtaggactaaa-ttatattagaaattggcaaaatgctttattaagattgcacttctgga 448  Q
    |||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| ||||| || |||  |||||||||| |||||||    
T  37625098 gtaggaacgattactagtattttgttgagaagtgtacgactaaatttttattagaaattcgcaaagtggttttataagattgcaattctgga 37625189  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 358 - 448
Target Start/End: Original strand, 37801636 - 37801727
Alignment:
Q  358 gtaggaacgattactagtattttgttgagaagtgtaggactaaa-ttatattagaaattggcaaaatgctttattaagattgcacttctgga 448  Q
    |||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||| ||||| || |||  |||||||||| |||||||    
T  37801636 gtaggaacgattactagtattttgttgagaagtgtacgtctaaatttttattagaaattcgcaaagtggttttataagattgcaattctgga 37801727  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 421
Target Start/End: Original strand, 29655723 - 29655786
Alignment:
Q  358 gtaggaacgattactagtattttgttgagaagtgtaggactaaattatattagaaattggcaaa 421  Q
    ||||||| |||||||| |||||||| |||||||| | ||||| ||| | |||||||||||||||    
T  29655723 gtaggaatgattactaatattttgtcgagaagtgcatgactatatttttttagaaattggcaaa 29655786  T

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Target: chr1 (Bit Score: 75; Significance: 5e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 20728375 - 20728457
Alignment:
Q  226 aggttgtgattgaaggtttcaagagttaccgagagcatattgccacagaggatttcagtcctaaagttaactgtgttggtaat 308  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20728375 aggttgtgattgaaggtttcaagagttatcgagagcaaattgccacagaggatttcagtcctaaagttaactgtgttggtaat 20728457  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 825 - 916
Target Start/End: Original strand, 20729473 - 20729564
Alignment:
Q  825 aatagtatctgtttgctcatttttctgcagttggtgctaatggatctggtaaaacaaattttttccatggtaagaaaattgtcatatcctgt 916  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | ||| ||||||    
T  20729473 aatagtatctgtttgctcatttttttgcagttggtgctaatggatctggcaaaacaatttttttccatggtaagaaaatcgccatttcctgt 20729564  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 20727935 - 20728021
Alignment:
Q  39 ttttgtaggcttggttatgatagtttcaacatgttcattaaacaggtaattgtgttttaaaatgctttgatacatttatttattttt 125  Q
    ||||||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||  || | |||||||||||||||||||||||    
T  20727935 ttttgtagggttggttacgatagtttcaacatgttcattaagcaggtaattttgtttagaagttctttgatacatttatttattttt 20728021  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 724 - 782
Target Start/End: Original strand, 20729355 - 20729413
Alignment:
Q  724 tctttatactctcatgcttcttccttatgtttattccatgtaatttactgtgaagttgt 782  Q
    |||| ||||||| ||  ||||||||| |||||||||||| ||||||| |||||||||||    
T  20729355 tcttcatactctgataattcttccttttgtttattccatctaatttaatgtgaagttgt 20729413  T

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Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 50935346 - 50935265
Alignment:
Q  226 aggttgtgattgaaggtttcaagagttaccgagagcatattgccacagaggatttcagtcctaaagttaactgtgttggtaat 308  Q
    |||||||||| |||||||||||||||||||||||| |  ||| ||| |||||||||||| |||||||||| ||||||||||||    
T  50935346 aggttgtgatcgaaggtttcaagagttaccgagagaaatttgacacggaggatttcagt-ctaaagttaattgtgttggtaat 50935265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 845 - 916
Target Start/End: Complemental strand, 50934732 - 50934662
Alignment:
Q  845 ttttctgcagttggtgctaatggatctggtaaaacaaattttttccatggtaagaaaattgtcatatcctgt 916  Q
    |||| ||||||||||||||||||||||| | |||| ||||||||| ||||||||||||||| ||| ||||||    
T  50934732 ttttttgcagttggtgctaatggatctg-tcaaactaattttttctatggtaagaaaattgccatttcctgt 50934662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 701 - 783
Target Start/End: Complemental strand, 50934919 - 50934837
Alignment:
Q  701 acattctcatcattttcactacttctttatactctcatgcttcttccttatgtttattccatgtaatttactgtgaagttgtt 783  Q
    |||||||| |||||||||  ||  ||||||||||| | | ||||||||| |||||||||||| ||||||| ||||||||||||    
T  50934919 acattctcttcattttcatcaccactttatactctgaagattcttccttttgtttattccatctaatttaatgtgaagttgtt 50934837  T

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