View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5681-Insertion-5 (Length: 870)
Name: NF5681-Insertion-5
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5681-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 24 - 484
Target Start/End: Original strand, 24145667 - 24146126
Alignment:
| Q |
24 |
catcaaccatcaatgtagtgttgcctgaagtatttcgacatatctctaactttttatatgtgtcaaagaggaatccatggaatctcaaagcaaagaaaaa |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24145667 |
catcaaccatcaatgtagtgttgcctgaagtatttcgacatatctctaactttttat--gtgtcaaagaggaatccatggaatctcaaagcaaagaaaaa |
24145764 |
T |
|
| Q |
124 |
tggtttccttgtatatggggccttagcataccacataaatcaagacatttttatggaagttctgtcgcaatgtttttctcacctacgatcaacttcgacg |
223 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24145765 |
tggtttccttgtatatggggccttagcataccacagaaatcaagacatttttatggaggttctgtcgcaatgtttttctcacctacgatcaacttcgacg |
24145864 |
T |
|
| Q |
224 |
gagagttatacatctgcagatatggaggaaggaataccattgacgtgttctttgatataataagtaatttgaaaaattagcaacttcaaaatagaggaac |
323 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24145865 |
gagagttatacatctgcagatatggaggaatgaataccattgacgtgttctttgatataataagtaatttgaaaaattagtaacttcaaaatagaggaac |
24145964 |
T |
|
| Q |
324 |
acagaaattttag-tatgtacttatgggttttatggaagtcaagaaatgagtagttttggaaaaacaatcaagagactaaggaggagataattgattcgg |
422 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24145965 |
acagaaattttagaaatgtacttatgggttttataaaagtcaagaaatgagtaattttggaaaaacaatcaagagactaaggaggagataattgattcgg |
24146064 |
T |
|
| Q |
423 |
caaaactggtttttcttcagaggaattcgggtaaaaatcatggtgtcacaaaccaaacatgt |
484 |
Q |
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| T |
24146065 |
caaaactggtttttcttgagaggaattggggtaaaaatcatgctgtcactaaccaaacatgt |
24146126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 669 - 870
Target Start/End: Original strand, 24146316 - 24146517
Alignment:
| Q |
669 |
gttagggttgaagtttcacctattccagccgacactaattattataccatgcttccttcaattatgaggccagtaagtatctgtgcttctggttttgagc |
768 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24146316 |
gttagggttgaagtttcacctattccagccgacactaattattatactatgcttccttcaattatgaggccagtaagtatctgtgcttctggttttgagc |
24146415 |
T |
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| Q |
769 |
aatcactaattatggcttttgcattcttcccaggcttccaagctacacttttgctcggcatctctacaacgccgttctttcatcaatcttgtttgaaatc |
868 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24146416 |
aatcactaattatggcttttgcattcttcccagggttccaagctacacttttgctcggcatctctacaacgcacttctttcatcaatcttgtttgaaatc |
24146515 |
T |
|
| Q |
869 |
tt |
870 |
Q |
| |
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|| |
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|
| T |
24146516 |
tt |
24146517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 249 - 483
Target Start/End: Original strand, 24150940 - 24151175
Alignment:
| Q |
249 |
aggaaggaataccattgacgtgttctttgatataataagtaatttgaaaaattagcaacttcaaaatagaggaacacagaaattttagtatgtacttatg |
348 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
24150940 |
aggaatgaataccattgacgtgttctttgatataacaagtaatttgaaaaattagttacttcaaaatagaggaacacatgaattttacgatgtacttatg |
24151039 |
T |
|
| Q |
349 |
ggttttatggaagtcaagaaatgagtagttttgg-aaaaacaatcaagagactaaggaggagataattgattcggcaaaactggtttttcttcagaggaa |
447 |
Q |
| |
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|||||| |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
24151040 |
ggttttttggaagtcaagaaatgagaaattttggaaaaaacaatcaagagactaaggaggagataattgattcggcaaaactgatttttcttgagaggaa |
24151139 |
T |
|
| Q |
448 |
ttcgggtaaaaatcatggtgtcacaaaccaaacatg |
483 |
Q |
| |
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| ||||||||||| || ||||| ||||||||||| |
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| T |
24151140 |
ctggggtaaaaatcgtgctgtcattaaccaaacatg |
24151175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 483 - 629
Target Start/End: Original strand, 24146165 - 24146311
Alignment:
| Q |
483 |
gtcgcctgtgagcttccaacaagaacagcgtaatggtttcactgctgtaataaacaatcagactggcgtgtttattatgatcctctcgtaatgattgatc |
582 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24146165 |
gtcgcctgtgagcttccaacaacaacagcgtaatggtttcactgctgtaataaacgatcagactggcgtgtttattatgatcctctcgtaatgattgatc |
24146264 |
T |
|
| Q |
583 |
atttgttgaacaatgaagtgaactagtacgattttccttcaaagtgt |
629 |
Q |
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| T |
24146265 |
atttgttgaacaatgaagtgaactagtacgattttccttcaaagtgt |
24146311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 635 - 870
Target Start/End: Original strand, 24151692 - 24151941
Alignment:
| Q |
635 |
ataatattctccttaacacttactgtacctgtcagt--tagggttgaagtttcacctattccagccgacactaatta-ttataccatgcttccttcaatt |
731 |
Q |
| |
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||||| |||| |||| ||||||| |||||||||| | ||||||||||||||| |||||||||||| ||||||||| |||||| ||||||||||||||| |
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| T |
24151692 |
ataatcttctgcttagcacttaccgtacctgtcaatcttagggttgaagtttcgcctattccagccatcactaattaattatactatgcttccttcaatt |
24151791 |
T |
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| Q |
732 |
atgaggccagtaa-----------gtatctgtgcttctggttttgagcaatcactaattatggcttttgcattcttcccaggcttccaagctacactttt |
820 |
Q |
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| T |
24151792 |
atgaggccagtaaaattgtagcgagtatctgtgcttctgattatgagcaatcactacttatggcttttgcattcttctaaggcttccaagctacatttta |
24151891 |
T |
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| Q |
821 |
gctcggcatctctacaacgccgttctttcatcaatcttgtttgaaatctt |
870 |
Q |
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| T |
24151892 |
gctcggcatctctacaacgcccttctttcatcaatcttgtttgaaatctt |
24151941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 57 - 234
Target Start/End: Original strand, 24150639 - 24150829
Alignment:
| Q |
57 |
ttcgacatatctctaactttt-tatatgtgtcaaagaggaatccatggaatctcaaagcaaagaaaaatggtttccttgtatatggggccttagcatacc |
155 |
Q |
| |
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||||||| |||| ||||| || |||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24150639 |
ttcgacacatctttaactcttgtatatgggtcaaagaggcatccaaggaatctcaaagcaaagaaaaatagtttccttgtatatggggccttagcatacc |
24150738 |
T |
|
| Q |
156 |
acataaatc-------aagacatttttatggaagt-----tctgtcgcaatgtttttctcacctacgatcaacttcgacggagagttatac |
234 |
Q |
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||| ||||| |||||||||||||||| || | |||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
24150739 |
acagaaatcaagagtgaagacatttttatggaggttttaatttgtcgcaatgtttttctcacctgagatcaacttcgacggagaggtatac |
24150829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 485 - 561
Target Start/End: Original strand, 24151217 - 24151293
Alignment:
| Q |
485 |
cgcctgtgagcttccaacaagaacagcgtaatggtttcactgctgtaataaacaatcagactggcgtgtttattatg |
561 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24151217 |
cgcctgtgaccttccaacaacaacagcgtaatggtttcactgctgtaataaacgatcagactggcgtgtttattatg |
24151293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 24151586 - 24151667
Alignment:
| Q |
558 |
tatgatcctctcgtaatgattgatcatttgttgaacaatgaagtgaactagtacgattttccttcaaagtgtgagaaataat |
639 |
Q |
| |
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|||||||||| | ||| || ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| |
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| T |
24151586 |
tatgatcctcatgcaatcatcgatcatttgttgaacaatgaaatgaactagtacgattttccttcaaaatgtgaaaaataat |
24151667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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