View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5681-Insertion-6 (Length: 582)
Name: NF5681-Insertion-6
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5681-Insertion-6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 183; Significance: 1e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 4058588 - 4058354
Alignment:
| Q |
6 |
cacttttagggaacatgacaataaaaattgaccgtgaagaattacttgttagaccttagagcaccaaatggggtagttcccaattgacttagggataatt |
105 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4058588 |
cacttttagggaacatggcaataaaaattgactgcgaagaattacttgttagaccttagaggtccaaatggggtagttcccaattgacttagggataatt |
4058489 |
T |
|
| Q |
106 |
gcttattattataagttattgtgtcacctacttctgccttaactagtcacctaaattgatcttgtaataagttgtgtgagtttattagaacttgaatgtg |
205 |
Q |
| |
|
| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4058488 |
gtttattattataagttactgtgtcacctgcttctgccttaactagtcacctaaattgatcttggaataagttgtgtgagtttattagaacttgtatgtg |
4058389 |
T |
|
| Q |
206 |
tatctcttatatgagagcatggtgttgcgtcttca |
240 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||||| |
|
|
| T |
4058388 |
tatctcttatacgagagcatagtgttgcctcttca |
4058354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 435 - 579
Target Start/End: Complemental strand, 4056382 - 4056238
Alignment:
| Q |
435 |
tatatcataatataacatgcacctatgattcaccgttcttgaccttctcttctcattttacatataaatgccacaaaaatcttatgcaaaaagcttgtat |
534 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4056382 |
tatattataatataacgtgcacctatgattcaccgttcttgaccttcttttctcattttacatataaattccacaaaaatcttatgcaaaaagcttgtat |
4056283 |
T |
|
| Q |
535 |
tgttgcatgctattagaaatacaataaatatctagccaacactta |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4056282 |
tgttgcatgctattagaaatacaataaatatctagccaacactta |
4056238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 256 - 407
Target Start/End: Complemental strand, 4057329 - 4057176
Alignment:
| Q |
256 |
agaagcaatagagggcagataaatttgctaagaaagcaacaaaatgactcagagaaacaattcaaaactttgaactttttt-aatcactaagagagatta |
354 |
Q |
| |
|
||||| || |||||| |||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4057329 |
agaagtaaaagagggaagataaatttgctaagcaagcaataaaatgacttagagaaacaattcaaaactttgaacttttttaaatcactaagagagatta |
4057230 |
T |
|
| Q |
355 |
tcaatttattt-gcgaatcatggcggtttttggtgacctaaggatatacacatt |
407 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4057229 |
tcaatttgtttagcgaatcatggcggtttttggtgacctaaggatatacacatt |
4057176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University