View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5681-Insertion-7 (Length: 468)
Name: NF5681-Insertion-7
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5681-Insertion-7 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 9714751 - 9714500
Alignment:
| Q |
8 |
ggaagtttatcatggataagtctccaagtgatgaaagctcttgtggagggtatgnnnnnnntccagatcaccttggaccaaggcacattctgaccattcc |
107 |
Q |
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| T |
9714751 |
ggaagtttatcatggataagtctccaagtgatgaaagctcttgtggggggtatgaaagaattccagatcaccttggaccaaggcacattctgaccattcc |
9714652 |
T |
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| Q |
108 |
catacagactagagaaagccattttgttggaaagagttccatcaggagatgcagtccagtgaagagtgtcagataagtcatcctcaggcagagtgagttt |
207 |
Q |
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| T |
9714651 |
catacagactagagaaagccattttgttggaaagaattccatcaggggatgcagtccagtgaagagtgtcaggtaagtcatcctcaggcagagtgagttg |
9714552 |
T |
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| Q |
208 |
ttgaattctagcagctaaagctcgatcttttttatgtatgtagggtgggaga |
259 |
Q |
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| T |
9714551 |
ctgaattctagcagctaaagcaggatctttttgatgtatgtagggtgggaga |
9714500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 286 - 468
Target Start/End: Complemental strand, 18332983 - 18332803
Alignment:
| Q |
286 |
ctatgcctaaaccaatattaagtnnnnnnngcatggcacttcgagttcgatatgcaaannnnnnnnnncttctcaaaaccattagattatatatcgaaag |
385 |
Q |
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| T |
18332983 |
ctatgcctaaaccaatattaagtaaaaaaagcatggcacttcgagttcgatatgcaaaaattattat--ttttcaaaaccattagattatatatcgaaag |
18332886 |
T |
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| Q |
386 |
agtcgtatgaaaaaggggtatttacgattttatataattataatactctattttagtgtcacaattcttttttgctttcgttt |
468 |
Q |
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| T |
18332885 |
agtcgtatgaaaaaggggtatttactattttatataattaaaatactctattttagtgtcacaattcttttttgctttcgttt |
18332803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 358 - 468
Target Start/End: Complemental strand, 46507459 - 46507349
Alignment:
| Q |
358 |
tcaaaaccattagattatatatcgaaagagtcgtatgaaaaaggggtatttacgattttatataattataatactctattttagtgtcacaattcttttt |
457 |
Q |
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| T |
46507459 |
tcaaaaccattagattatatattgaaagagtcgtatgaaaaaggggtatttacgattttatataattataatactctattttagtatcacaattcttttt |
46507360 |
T |
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| Q |
458 |
tgctttcgttt |
468 |
Q |
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| T |
46507359 |
tgctttggttt |
46507349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 286 - 464
Target Start/End: Complemental strand, 36475260 - 36475083
Alignment:
| Q |
286 |
ctatgcctaaaccaatattaagtnnnnnnn-gcatggcacttcgagttcgatatgcaaannnnnnnnnncttctcaaaaccattagattatatatcgaaa |
384 |
Q |
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| T |
36475260 |
ctatgcctaaaccaatattaagtaaaaagaagcatggcacttcgagttcgatatgcaaaaatagtttt--ttttcaaaaccattagattatatatcaaaa |
36475163 |
T |
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| Q |
385 |
gagtcgtatgaaaaaggggtatttacgattttatataattataatactctattttagtgtcacaattcttttttgctttc |
464 |
Q |
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| T |
36475162 |
gagtcgtatgaaaaaggagtatttacgattttatataattataatactctattttagtgtcacagttcttttttgttttc |
36475083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 361 - 457
Target Start/End: Complemental strand, 5851190 - 5851094
Alignment:
| Q |
361 |
aaaccattagattatatatcgaaagagtcgtatgaaaaaggggtatttacgattttatataattataatactctattttagtgtcacaattcttttt |
457 |
Q |
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| T |
5851190 |
aaacaattagattatatatcgaaagagtcttatgaaaaagaggtatttacgattttatataattataatactatgttttagggttacaattcttttt |
5851094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 69060 - 69018
Alignment:
| Q |
11 |
agtttatcatggataagtctccaagtgatgaaagctcttgtgg |
53 |
Q |
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| T |
69060 |
agtttgtcatgaataagtctccaagtaatgaaagctcttgtgg |
69018 |
T |
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