View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5681_high_11 (Length: 332)

Name: NF5681_high_11
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5681_high_11
NF5681_high_11
[»] chr1 (2 HSPs)
chr1 (11-316)||(16088964-16089269)
chr1 (18-266)||(7327894-7328142)
[»] chr4 (1 HSPs)
chr4 (11-316)||(1664738-1665045)
[»] chr8 (1 HSPs)
chr8 (11-266)||(36037514-36037769)
[»] chr5 (2 HSPs)
chr5 (82-266)||(28556848-28557032)
chr5 (82-242)||(28549667-28549827)


Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 16088964 - 16089269
Alignment:
Q  11 cacagacttggatgatttccggtcaacaaaagcatactgcaatcgcctgaaactcctcgcagatcaactctcaaatgttgattctccggtcaacaacact 110  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16088964 cacagacttggatgatttccagtcaacaaaagcatactgcaatcgcctgaaactcctcgcagatcaactctcaaatgttgattctccggtcaacaacact 16089063  T
Q  111 cgtctcgtgttgaaaatgatttatggactgacagtttcgtatgcaagtttcgttacatacattcagcaacacgatcccttgccgatgtttgaaacggaaa 210  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||    
T  16089064 cgtctcgtgttgaaaatgatttatggactgacagattcgtatgcaagtttcgttacatacattcaacaacacgatcccttgccgacgtttgaaacggcaa 16089163  T
Q  211 aaccccgactggaattagaagaatccaccatgattcaacgcgttgcacgcgaatccggcaaccaatcatctccgacggccttacttatgaaatcagaaga 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16089164 aaccccgactggaattagaagaatccaccatgattcaacgcgttgcacgcgaatccggcaaccaatcatctccgacggccttacttatgaaatcagaaga 16089263  T
Q  311 tgcaaa 316  Q
    ||||||    
T  16089264 tgcaaa 16089269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 7328142 - 7327894
Alignment:
Q  18 ttggatgatttccggtcaacaaaagcatactgcaatcgcctgaaactcctcgcagatcaactctcaaatgttgattctccggtcaacaacactcgtctcg 117  Q
    ||||| ||||| | ||| || ||||| || |||||||| || ||| | ||||| ||||| ||  |||||||||||||||| || |||||||||||||| |    
T  7328142 ttggaagattttccgtctaccaaagcctattgcaatcgtctcaaattactcgccgatcagcttgcaaatgttgattctcccgtgaacaacactcgtcttg 7328043  T
Q  118 tgttgaaaatgatttatggactgacagtttcgtatgcaagtttcgttacatacattcagcaacacgatcccttgccgatgtttgaaacggaaaaaccccg 217  Q
    ||||||||||||||| |||||| || |  || |||||| | || || |||||||||||||||||||||||||||||||  ||||||||||  ||| | ||    
T  7328042 tgttgaaaatgatttctggactaactgactcttatgcaggatttgtcacatacattcagcaacacgatcccttgccgacatttgaaacggcgaaatctcg 7327943  T
Q  218 actggaattagaagaatccaccatgattcaacgcgttgcacgcgaatcc 266  Q
      ||||| |||||||||| ||||||  |||||| |||||||||||||||    
T  7327942 tttggaactagaagaatcaaccatggctcaacgtgttgcacgcgaatcc 7327894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 1664738 - 1665045
Alignment:
Q  11 cacagacttggatgatttccggtcaacaaaagcatactgcaatcgcctgaaactcctcgcagatcaactctcaaatgttgat--tctccggtcaacaaca 108  Q
    |||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||  ||||| ||||||||||    
T  1664738 cacacacttggatgatttcccgtcaacaaaagcacactgcaatcgcctgaaactcctcgcagatcaactctcaaatgctgatattctcccgtcaacaaca 1664837  T
Q  109 ctcgtctcgtgttgaaaatgatttatggactgacagtttcgtatgcaagtttcgttacatacattcagcaacacgatcccttgccgatgtttgaaacgga 208  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| |||||||||||| |||||||||||||  ||||||||||     
T  1664838 ctcgtctcgtgttgaaaatgatttctggactgacagattcgtatgcaggtttcgttacattcattcagcaacatgatcccttgccgacatttgaaacggc 1664937  T
Q  209 aaaaccccgactggaattagaagaatccaccatgattcaacgcgttgcacgcgaatccggcaaccaatcatctccgacggccttacttatgaaatcagaa 308  Q
     ||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||  |||||||||||| ||||||||||||    
T  1664938 gaaatcccgtatggaattagaagaatccaccatgattcaacgtgttgcacgcgaatccagcaaccaatcatctgtgacggccttactcatgaaatcagaa 1665037  T
Q  309 gatgcaaa 316  Q
    ||||||||    
T  1665038 gatgcaaa 1665045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 36037514 - 36037769
Alignment:
Q  11 cacagacttggatgatttccggtcaacaaaagcatactgcaatcgcctgaaactcctcgcagatcaactctcaaatgttgattctccggtcaacaacact 110  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36037514 cacacacttggatgatttcccgtcaacaaaagcatactgcaatcgcctgaaactcctcgcagatcaactctcaaatgttgattctcccgtcaacaacact 36037613  T
Q  111 cgtctcgtgttgaaaatgatttatggactgacagtttcgtatgcaagtttcgttacatacattcagcaacacgatcccttgccgatgtttgaaacggaaa 210  Q
    |||||||||||||||||||||| ||||||||||| ||||||| || |||| |||||||||||| ||||||||||||||||||||| |||||||||||  |    
T  36037614 cgtctcgtgttgaaaatgatttctggactgacagattcgtatacaggttttgttacatacatttagcaacacgatcccttgccgacgtttgaaacggcga 36037713  T
Q  211 aaccccgactggaattagaagaatccaccatgattcaacgcgttgcacgcgaatcc 266  Q
    || |||  |||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  36037714 aatcccagctggaatttgaagaatccaccatgattcaacgtgttgcacacgaatcc 36037769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 82 - 266
Target Start/End: Original strand, 28556848 - 28557032
Alignment:
Q  82 caaatgttgattctccggtcaacaacactcgtctcgtgttgaaaatgatttatggactgacagtttcgtatgcaagtttcgttacatacattcagcaaca 181  Q
    |||||| | ||||||| || | ||||||||||||   ||||||||||||||||||||| || |  || |||||| | ||||| |||||||||||||||||    
T  28556848 caaatgattattctcccgtgatcaacactcgtcttaggttgaaaatgatttatggactcaccgaatcatatgcaggattcgtcacatacattcagcaaca 28556947  T
Q  182 cgatcccttgccgatgtttgaaacggaaaaaccccgactggaattagaagaatccaccatgattcaacgcgttgcacgcgaatcc 266  Q
    ||||||||| ||||  ||||||| ||| ||| | ||  ||||| |||||||||| ||||||   ||||| |||||||||||||||    
T  28556948 cgatcccttaccgacatttgaaatggagaaatctcggttggaactagaagaatcaaccatggcccaacgtgttgcacgcgaatcc 28557032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 242
Target Start/End: Original strand, 28549667 - 28549827
Alignment:
Q  82 caaatgttgattctccggtcaacaacactcgtctcgtgttgaaaatgatttatggactgacagtttcgtatgcaagtttcgttacatacattcagcaaca 181  Q
    |||||| |||| |||| || |||||||||||||| ||||||||||||||||||||||| || |  || |||||| | ||| | ||||||||   ||||||    
T  28549667 caaatgatgatactcccgtgaacaacactcgtcttgtgttgaaaatgatttatggactcaccgaatcatatgcaggattcatcacatacatctggcaaca 28549766  T
Q  182 cgatcccttgccgatgtttgaaacggaaaaaccccgactggaattagaagaatccaccatg 242  Q
    ||||||||||||||  ||||||| ||| ||| |  |  ||||| |||||||||| ||||||    
T  28549767 cgatcccttgccgacatttgaaatggagaaatcttggttggaactagaagaatcaaccatg 28549827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University