View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5681_high_16 (Length: 251)
Name: NF5681_high_16
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5681_high_16 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 32148886 - 32148660
Alignment:
| Q |
25 |
taataatggcaacatcgtgttaaatacaaagaaacgtgacaatcatatttgacgttttttatttaacatctcaaatggcaactctatcaatatcccatgc |
124 |
Q |
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| T |
32148886 |
taataatggcaacatcgtgttaaatacaaagaaacgtgacaatcatatttgacgttttttatttaacatctcaaatggcaactctatcaatatcccatgc |
32148787 |
T |
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| Q |
125 |
aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac |
224 |
Q |
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| T |
32148786 |
aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac |
32148687 |
T |
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| Q |
225 |
acttcattacaatccttctcctatttt |
251 |
Q |
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| T |
32148686 |
acttcattacaaccctcctcctatttt |
32148660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 251
Target Start/End: Complemental strand, 32139387 - 32139270
Alignment:
| Q |
125 |
aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac |
224 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||| ||| || || ||||| ||| |||||||||||| | |||||| |||| |
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| T |
32139387 |
aatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttac---------atctttacactctagccatggctaattccaattttcaac |
32139297 |
T |
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| Q |
225 |
acttcattacaatccttctcctatttt |
251 |
Q |
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| T |
32139296 |
acttcattacaatccttctcctatttt |
32139270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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