View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5681_high_19 (Length: 213)

Name: NF5681_high_19
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5681_high_19
NF5681_high_19
[»] chr3 (1 HSPs)
chr3 (1-200)||(28042943-28043142)
[»] chr8 (1 HSPs)
chr8 (143-183)||(13130211-13130251)
[»] chr1 (2 HSPs)
chr1 (114-180)||(35691671-35691738)
chr1 (121-179)||(20711058-20711116)
[»] chr7 (1 HSPs)
chr7 (142-180)||(3231577-3231615)
[»] chr6 (1 HSPs)
chr6 (142-178)||(6087292-6087328)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 28043142 - 28042943
Alignment:
Q  1 tgtcgtctattgttgccaattgctaaatggaaagagttagaccaattaatatcgtgttgtgccttataacatcacccttcatttatggtattagaaagat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28043142 tgtcgtctattgttgccaattgctaaatggaaagagttagaccaattaatattgtgttgtgccttataacatcacccttcatttatggtattagaaagat 28043043  T
Q  101 agtttataaaattataattaagagtatactagaaaaagtatattaatgttatattgatattgtaaaatgatttataatttttgacttttttcttcttctc 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  28043042 agtttataaaattataattaagagtataatagaaaaagtatattaatgttacattgatattgtaaaattatttataatttttgacttttttcttcttctc 28042943  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 13130211 - 13130251
Alignment:
Q  143 ttaatgttatattgatattgtaaaatgatttataatttttg 183  Q
    |||||||| ||||||||||||||| ||||||||||||||||    
T  13130211 ttaatgttttattgatattgtaaagtgatttataatttttg 13130251  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 35691671 - 35691738
Alignment:
Q  114 ataattaagagtatactagaaaaagtata-ttaatgttatattgatattgtaaaatgatttataattt 180  Q
    ||||||||| ||||| || |||||||| | |||||||| ||||| ||||||||||||| |||||||||    
T  35691671 ataattaagggtataatataaaaagtaaaattaatgttttattggtattgtaaaatgacttataattt 35691738  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 20711058 - 20711116
Alignment:
Q  121 agagtatactagaaaaagtatattaatgttatattgatattgtaaaatgatttataatt 179  Q
    |||||||| |||||||   |||||||||||  |||| ||||||||||||||||||||||    
T  20711058 agagtataatagaaaagtaatattaatgtttcattggtattgtaaaatgatttataatt 20711116  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 3231577 - 3231615
Alignment:
Q  142 attaatgttatattgatattgtaaaatgatttataattt 180  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  3231577 attaatgttttattgatattgtaaaacgatttataattt 3231615  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 6087292 - 6087328
Alignment:
Q  142 attaatgttatattgatattgtaaaatgatttataat 178  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  6087292 attaatgttttattgatattgtaaaacgatttataat 6087328  T

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