View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5681_high_20 (Length: 208)
Name: NF5681_high_20
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5681_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 42935038 - 42934917
Alignment:
| Q |
69 |
ctccaatcaataacgtagatgcaataggaaagagcaagaaaaattctgaaatctatgtcttacaaaagaaaaatactagtctaaagtttggacacatcta |
168 |
Q |
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| T |
42935038 |
ctccaatcaataacgtagatgcaataggaaagagcaagaaaaattctgaaatctatgtcttacaaaagaaaaatactagtctaaagtttggacacatcta |
42934939 |
T |
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| Q |
169 |
gtgccaatctaagtctaattaa |
190 |
Q |
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| T |
42934938 |
gtgccaatctaagtctaattaa |
42934917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 42935099 - 42935061
Alignment:
| Q |
14 |
agagaaatgaaaaatcggaaataaacgttgttgaagccg |
52 |
Q |
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| T |
42935099 |
agagaaatgaaaaatcggaaataaacgttgttgaagccg |
42935061 |
T |
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