View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5681_high_9 (Length: 337)
Name: NF5681_high_9
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5681_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 323
Target Start/End: Original strand, 43333178 - 43333487
Alignment:
| Q |
15 |
tattgttatatgcaaaaattaaatatttgttttctagtcatctgaaaagacgaatagagaacaattgagacattcatggagagttgacactcgaaataac |
114 |
Q |
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| T |
43333178 |
tattgttatatgcaaaaattaaatatttgttttctagtcgtttgaaaagacgaatagagaacaattgaggcattcctggagagttgacactcgaaataac |
43333277 |
T |
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| Q |
115 |
agttgtgctttattttgacacagttacttgaataatatcctctaaatattaaatcagtacttgaaagaagctatttctacnnnnnnnttcgaagatttaa |
214 |
Q |
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| T |
43333278 |
agttgtgctttattttgacacaggtacttgaataatatcctctaaatattaaattagtacttgaaagaagctatttctac--gggggttcgaagatttaa |
43333375 |
T |
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| Q |
215 |
gtcattcatattcaaataacttccttatcggaaacatgcaagagagtagagacgtttatgaattggttacaatacttagaccttta---tcaaagccatc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
43333376 |
gtcattcatattcaaataacttccttatcggaaacatgcaagagagtagagacgtttatgaattggttacaatacttagacctttacctttcaagccatc |
43333475 |
T |
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| Q |
312 |
aaagatcatgat |
323 |
Q |
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|||||||||||| |
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| T |
43333476 |
aaagatcatgat |
43333487 |
T |
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