View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5681_low_1 (Length: 819)
Name: NF5681_low_1
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5681_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 3 - 462
Target Start/End: Complemental strand, 42935853 - 42935391
Alignment:
| Q |
3 |
caaaggatcaaagcaaagatgatgaagttgtgaaacaagttcggttcgaagaagaaaaagtgatccaagaggatgatgttgttacagcatcaggaactgt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42935853 |
caaaggatcaaagcaaagatgatgaagttgtgaaacaagttcggttcgaagaagaaaaagtgatccaagaggatgctgttgttacagcatcaggaactgt |
42935754 |
T |
|
| Q |
103 |
gatggagccaaagaccaatactactgatgt---tgatcatgaaaatgttggtggtgttgttaagaaccgcgaagctacgttggcaacgttgaatgtgttg |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42935753 |
gatggagccaaagaccaatacttctgatgtggttgatcatgaaaatgtcggtggtgttgttaagaaccgtgaagctacgttggcaacgttgaatgtgttg |
42935654 |
T |
|
| Q |
200 |
aaagagagcttggaacaagagttgggacaagttaagtttctaatgaatctaattggtggagaggagattcatgtggctgaaagtgatgagaaaatggtgc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42935653 |
aaagagagcttggaacaagagttgggacaagttaagtttctaatgaatctaattggtggagaggagattcatgtggctgaaagtgatgagaaaatggtgc |
42935554 |
T |
|
| Q |
300 |
aagagatctctaagttgaggacagaattggaaaatgagaagaagaagaacttgcagctggagatgcagctggagaatatcaagcttcacctaatttcctc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42935553 |
aagagatctctaagttgaggacagaattggaaaatgagaagaagaagaacttgcagctggagatgcagctggagaatatcaagcttcacctaatttcctc |
42935454 |
T |
|
| Q |
400 |
tgctgctaatagtcctactagttagttaacttgataatatgtgtttctacataatatctctga |
462 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42935453 |
tgctgctaatagtcctactagttaattaacttgataatatgtgtttctacataatatctctga |
42935391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 504 - 819
Target Start/End: Complemental strand, 42935391 - 42935076
Alignment:
| Q |
504 |
atatgttgtatttcttaaagttagatactctactggagatgtgcaacaatcatagagaatttaagctcctgttacggaatttggattctctataactgtt |
603 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42935391 |
atatgttgtatttcttaaatttagatactctaccggagatgtgcaacaatcatagagaatttaagctcctgttacggaatttggattctctataactgtt |
42935292 |
T |
|
| Q |
604 |
gcgcagttcaacggattataagatagttggatctaaattttaataaatttagatgaaacggccctatagagaccgtcacatcaattttaataaatttaga |
703 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42935291 |
gcacagtgcaacggattataagatagttggatctaaattttaataaatttagatgaaacggccctatagagaccgtcacatcaattttaataaatttaga |
42935192 |
T |
|
| Q |
704 |
tccaacggtcctacagagaccgttgcatctgtagcaagcgttcaatatgaacttctcaaatactagatggcaggggatagttttattttaacagagaaat |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42935191 |
tccaacggtcctacagagaccgttgcatctgtagcaagcgttcaatatgaacttctcaaatactagatggcaggggatagttttattttaacagagaaat |
42935092 |
T |
|
| Q |
804 |
gaaaaatcggaaataa |
819 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
42935091 |
gaaaaatcggaaataa |
42935076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University