View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5681_low_10 (Length: 334)

Name: NF5681_low_10
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5681_low_10
NF5681_low_10
[»] chr7 (19 HSPs)
chr7 (19-330)||(14088593-14088907)
chr7 (19-330)||(14398611-14398925)
chr7 (19-107)||(9230472-9230560)
chr7 (19-111)||(26493730-26493822)
chr7 (19-110)||(23179902-23179992)
chr7 (19-127)||(25491650-25491758)
chr7 (23-96)||(8638696-8638770)
chr7 (19-111)||(27387322-27387414)
chr7 (19-111)||(38575305-38575397)
chr7 (21-108)||(19400048-19400135)
chr7 (147-233)||(6770438-6770524)
chr7 (22-76)||(9557790-9557844)
chr7 (21-111)||(45197710-45197800)
chr7 (147-203)||(36282451-36282507)
chr7 (181-235)||(25491775-25491829)
chr7 (29-74)||(25024627-25024672)
chr7 (19-54)||(26782330-26782365)
chr7 (19-65)||(10868467-10868513)
chr7 (71-107)||(43728067-43728103)
[»] chr8 (30 HSPs)
chr8 (19-107)||(13152410-13152498)
chr8 (21-111)||(16532649-16532739)
chr8 (19-111)||(9256456-9256548)
chr8 (20-111)||(14446899-14446990)
chr8 (21-111)||(32372025-32372115)
chr8 (19-111)||(10014451-10014543)
chr8 (19-111)||(30791474-30791566)
chr8 (21-109)||(40146028-40146116)
chr8 (21-111)||(32359489-32359579)
chr8 (21-111)||(27190838-27190928)
chr8 (21-111)||(32342883-32342973)
chr8 (21-111)||(32355370-32355460)
chr8 (147-233)||(14051216-14051302)
chr8 (21-111)||(21958579-21958669)
chr8 (23-118)||(2826326-2826418)
chr8 (19-111)||(34228245-34228337)
chr8 (19-111)||(24333781-24333876)
chr8 (147-213)||(32342759-32342825)
chr8 (147-213)||(32355246-32355312)
chr8 (147-213)||(32359364-32359430)
chr8 (147-213)||(32371900-32371966)
chr8 (157-235)||(34230217-34230295)
chr8 (183-232)||(10397166-10397215)
chr8 (182-231)||(24592610-24592659)
chr8 (148-232)||(30794384-30794468)
chr8 (10-60)||(28846723-28846773)
chr8 (19-64)||(10467865-10467910)
chr8 (174-222)||(2826474-2826522)
chr8 (21-53)||(24592355-24592387)
chr8 (19-55)||(42447048-42447084)
[»] chr4 (17 HSPs)
chr4 (19-111)||(31944683-31944775)
chr4 (21-111)||(3074436-3074526)
chr4 (21-110)||(53693052-53693141)
chr4 (21-107)||(12211244-12211330)
chr4 (21-111)||(8897944-8898034)
chr4 (19-110)||(4325480-4325570)
chr4 (19-93)||(1147584-1147658)
chr4 (49-111)||(27364950-27365012)
chr4 (20-73)||(25182896-25182949)
chr4 (152-235)||(12211917-12211999)
chr4 (21-111)||(10632662-10632754)
chr4 (19-54)||(48130099-48130134)
chr4 (25-109)||(3240296-3240380)
chr4 (147-235)||(20113780-20113868)
chr4 (28-111)||(42843774-42843860)
chr4 (180-232)||(43874903-43874955)
chr4 (28-111)||(55464685-55464768)
[»] chr5 (18 HSPs)
chr5 (21-111)||(22712917-22713007)
chr5 (19-111)||(203917-204009)
chr5 (34-111)||(1280445-1280522)
chr5 (21-111)||(27168821-27168911)
chr5 (19-107)||(3055553-3055641)
chr5 (147-226)||(191938-192016)
chr5 (148-235)||(1279745-1279832)
chr5 (147-229)||(42615048-42615130)
chr5 (19-112)||(11852781-11852874)
chr5 (31-111)||(19518970-19519050)
chr5 (19-111)||(23244586-23244678)
chr5 (21-107)||(2228986-2229072)
chr5 (22-111)||(26540674-26540763)
chr5 (21-111)||(22541953-22542043)
chr5 (19-107)||(8785853-8785941)
chr5 (147-232)||(38269506-38269589)
chr5 (198-227)||(37168999-37169028)
chr5 (20-76)||(192060-192116)
[»] chr6 (13 HSPs)
chr6 (19-111)||(3050930-3051022)
chr6 (21-111)||(32441992-32442082)
chr6 (19-111)||(12180541-12180633)
chr6 (26-111)||(30621240-30621324)
chr6 (19-111)||(11971027-11971118)
chr6 (21-111)||(25599219-25599312)
chr6 (147-233)||(4231742-4231828)
chr6 (21-111)||(25340512-25340601)
chr6 (147-233)||(6418799-6418885)
chr6 (23-111)||(1296576-1296664)
chr6 (28-109)||(24074481-24074562)
chr6 (147-232)||(24697907-24697992)
chr6 (148-220)||(22258344-22258416)
[»] scaffold0019 (1 HSPs)
scaffold0019 (20-111)||(134871-134962)
[»] chr1 (20 HSPs)
chr1 (20-111)||(9637188-9637279)
chr1 (19-111)||(25017453-25017545)
chr1 (21-111)||(26272947-26273037)
chr1 (19-107)||(52753836-52753921)
chr1 (22-111)||(40864738-40864827)
chr1 (19-107)||(14498968-14499056)
chr1 (19-111)||(17874845-17874937)
chr1 (21-109)||(48606630-48606718)
chr1 (19-111)||(32379872-32379963)
chr1 (23-111)||(35948998-35949086)
chr1 (21-76)||(28463197-28463252)
chr1 (29-111)||(21973814-21973896)
chr1 (21-111)||(30559023-30559113)
chr1 (151-235)||(26273639-26273723)
chr1 (21-76)||(11843917-11843972)
chr1 (179-232)||(33330742-33330795)
chr1 (147-232)||(17874703-17874788)
chr1 (19-54)||(33489827-33489862)
chr1 (19-54)||(41972267-41972302)
chr1 (19-76)||(30054923-30054980)
[»] scaffold0726 (1 HSPs)
scaffold0726 (21-107)||(954-1040)
[»] chr3 (21 HSPs)
chr3 (21-107)||(24988831-24988917)
chr3 (19-111)||(51262046-51262138)
chr3 (19-111)||(53710465-53710557)
chr3 (21-107)||(3856894-3856980)
chr3 (147-233)||(20610006-20610092)
chr3 (28-111)||(31989096-31989179)
chr3 (20-111)||(22934816-22934907)
chr3 (21-111)||(43137194-43137283)
chr3 (147-233)||(17036178-17036264)
chr3 (22-75)||(38282510-38282563)
chr3 (19-107)||(37381885-37381973)
chr3 (22-108)||(24908412-24908498)
chr3 (179-232)||(2983653-2983706)
chr3 (147-200)||(37382977-37383030)
chr3 (40-111)||(15668040-15668111)
chr3 (147-201)||(43135203-43135257)
chr3 (19-61)||(51408625-51408667)
chr3 (179-218)||(22934996-22935035)
chr3 (147-204)||(38282412-38282469)
chr3 (148-232)||(8175700-8175784)
chr3 (198-226)||(20382651-20382679)
[»] scaffold0178 (1 HSPs)
scaffold0178 (19-111)||(17807-17899)
[»] chr2 (21 HSPs)
chr2 (19-111)||(12539640-12539732)
chr2 (19-111)||(19951847-19951939)
chr2 (21-111)||(33453206-33453296)
chr2 (22-111)||(22464737-22464826)
chr2 (22-111)||(22483616-22483705)
chr2 (22-111)||(34526419-34526508)
chr2 (20-93)||(7886675-7886748)
chr2 (149-232)||(19952541-19952624)
chr2 (21-76)||(45121334-45121389)
chr2 (24-74)||(31392504-31392554)
chr2 (31-107)||(35649688-35649764)
chr2 (21-76)||(34317491-34317546)
chr2 (54-111)||(13308783-13308840)
chr2 (179-232)||(18426150-18426203)
chr2 (186-233)||(24983794-24983841)
chr2 (22-97)||(26656360-26656434)
chr2 (40-111)||(34907652-34907723)
chr2 (147-226)||(45121217-45121296)
chr2 (19-61)||(13309706-13309748)
chr2 (34-111)||(18425992-18426069)
chr2 (19-48)||(31392926-31392955)
[»] scaffold0198 (1 HSPs)
scaffold0198 (23-111)||(1463-1551)
[»] scaffold0007 (1 HSPs)
scaffold0007 (19-111)||(259985-260077)
[»] scaffold0092 (1 HSPs)
scaffold0092 (147-233)||(46403-46489)
[»] scaffold0168 (1 HSPs)
scaffold0168 (22-111)||(15881-15970)
[»] scaffold0012 (1 HSPs)
scaffold0012 (22-111)||(197172-197261)
[»] scaffold0015 (1 HSPs)
scaffold0015 (21-111)||(214179-214269)
[»] scaffold0002 (1 HSPs)
scaffold0002 (21-72)||(435366-435417)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 14088907 - 14088593
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtgagaaattt 118  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14088907 gtcaatagtgtgctaaataaaattaggaggtaaatgccttttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtgagaaattt 14088808  T
Q  119 caaaatttgcccnnnnnnnnnnnnnnn---gagtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgccc 215  Q
    ||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14088807 caaaatttgccctttttttttttgttttttgagtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgccc 14088708  T
Q  216 ggggtcgccgggtggtggaattgcccatgcatataactaatgcttaaggttttggggtggagatgtagcgtctgcctctcttgtaattctggagcatttg 315  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14088707 ggggtcgccgggtggtggaattgctcatgcatataactaatgcttaaggttttggggtggagatgtagcgtctgcctctcttgtaattctggagcatttg 14088608  T
Q  316 taccctttgcttctc 330  Q
    ||||| ||| |||||    
T  14088607 tacccgttgtttctc 14088593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 14398925 - 14398611
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtgagaaattt 118  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14398925 gtcaatagtgtgctaaataaaattaggaggtaaatgccttttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtgagaaattt 14398826  T
Q  119 caaaatttgcccnnnnnnnnnnnnnnn---gagtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgccc 215  Q
    ||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14398825 caaaatttgccctttttttttttgttttttgagtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgccc 14398726  T
Q  216 ggggtcgccgggtggtggaattgcccatgcatataactaatgcttaaggttttggggtggagatgtagcgtctgcctctcttgtaattctggagcatttg 315  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14398725 ggggtcgccgggtggtggaattgctcatgcatataactaatgcttaaggttttggggtggagatgtagcgtctgcctctcttgtaattctggagcatttg 14398626  T
Q  316 taccctttgcttctc 330  Q
    ||||| ||| |||||    
T  14398625 tacccgttgtttctc 14398611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 9230560 - 9230472
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaa 107  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| ||||| ||||||||||| |||||||||    
T  9230560 gtcaatagtgtgctaaataaaattaggaggtaaatgcccttttcgatacctctttgcgatgaatgttcgaataatatcaacatcatcaa 9230472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 26493730 - 26493822
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| || || ||||| ||||||||||| |||||||||||||    
T  26493730 gtcaatagcgtgctaaataaaattaggaggtaaatgccctttccgagacctctttacggtgaatgttcgaataatatcaacatcatcaagtga 26493822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 23179902 - 23179992
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtg 110  Q
    |||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| || ||||| ||||||||||| ||| ||||||||    
T  23179902 gtcaatagtgtgctaaattaaattaggag-taaatgccctttccaagacctctttgcggtgaatgttcgaataatatcaacattatcaagtg 23179992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 25491650 - 25491758
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtgagaaattt 118  Q
    |||||||||||| |||||||||| ||||  |||||||| |||  ||||||||||| |  || ||||| ||||||||||| ||||||||||||||||||||    
T  25491650 gtcaatagtgtgataaataaaatcaggaagtaaatgccttttttgagacctctttacagtgaatgttcgaataatatcaacatcatcaagtgagaaattt 25491749  T
Q  119 caaaatttg 127  Q
    || ||||||    
T  25491750 cataatttg 25491758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 8638770 - 8638696
Alignment:
Q  23 atagtgtgctaaataaaattaggagctaaatgccctttccgaga-cctctttgcgatggatgtttgaataatatc 96  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||| ||||||||||    
T  8638770 atagtgtgctaaataaaattaggaggtaaatgccctttccgagaccctctttgcgttgaatgttcgaataatatc 8638696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 27387322 - 27387414
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcga-tggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||| ||| || ||||| ||||||||||| |||||||||||||    
T  27387322 gtcaatagcgtgctaaataaaattaggaggtaaatgctctttccgcgacctcttt-cgagtgaatgttcgaataatatcaacatcatcaagtga 27387414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 38575305 - 38575397
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcga-tggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||| |||||||||||||||||||| ||||||  ||||||| ||||||||| ||| || ||||| ||||||||||| |||||||||||||    
T  38575305 gtcaatagcgtgctaaataaaattaggaggtaaatgttctttccgcgacctcttt-cgagtgaatgttcgaataatatcaacatcatcaagtga 38575397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 19400135 - 19400048
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcga-tggatgtttgaataatatcagcatcatcaag 108  Q
    |||||| |||||||||||||||||||| ||||| ||||||||| ||||||||| ||| || ||||| ||||||||||| ||||||||||    
T  19400135 caatagcgtgctaaataaaattaggaggtaaataccctttccgcgacctcttt-cgagtgaatgttcgaataatatcaacatcatcaag 19400048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 233
Target Start/End: Complemental strand, 6770524 - 6770438
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtgg 233  Q
    ||||||||||||||||| |  |||| |  | ||||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||    
T  6770524 agtgggttaatgggctatttagttgggaaaaatataaagaaaatattgattgagcccaggcaaatgcccggggtcgccgggtggtgg 6770438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 9557844 - 9557790
Alignment:
Q  22 aatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcg 76  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  9557844 aatagtgtgctaaataaaattaggaggtaaatcccctttcagagacctctttgcg 9557790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 45197800 - 45197710
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||| |||||||||||||||||||  ||||||||||  |||||||||||||| | || ||||| ||| ||||||| |||| ||||||||    
T  45197800 caatagggtgctaaataaaattaggatgtaaatgccctccccgagacctctttgtggtgaatgttcgaacaatatcaacatcgtcaagtga 45197710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 36282451 - 36282507
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagccc 203  Q
    ||||||||||||||||| ||| ||| |||| |||| |||||||||||||||||||||    
T  36282451 agtgggttaatgggctattggattgggccaaatatgaagaaagtatcgattgagccc 36282507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 25491775 - 25491829
Alignment:
Q  181 taaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtggaa 235  Q
    |||||||||||||||||||| |||||| |||| | | ||||||||||||||||||    
T  25491775 taaagaaagtatcgattgagtccgggcgagtgtctgaggtcgccgggtggtggaa 25491829  T

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Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 25024672 - 25024627
Alignment:
Q  29 tgctaaataaaattaggagctaaatgccctttccgagacctctttg 74  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||||    
T  25024672 tgcttaataaaattaggaggtaaatgccctttctgagacctctttg 25024627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 26782330 - 26782365
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatg 54  Q
    ||||||||||||||||||||||||||||| ||||||    
T  26782330 gtcaatagtgtgctaaataaaattaggaggtaaatg 26782365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 10868467 - 10868513
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgag 65  Q
    ||||| ||||||||||||||||||||||| |||||| | ||||||||    
T  10868467 gtcaaaagtgtgctaaataaaattaggaggtaaatgtcttttccgag 10868513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 43728103 - 43728067
Alignment:
Q  71 tttgcgatggatgtttgaataatatcagcatcatcaa 107  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  43728103 tttgcgatgaatgtttgaataatatcaacatcatcaa 43728067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 13152410 - 13152498
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaa 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||    
T  13152410 gtcaatagtgtgctaaataaaattaggaggtaaatgccctttccgagacctctttgcgatgaatgttggaataataccaacatcatcaa 13152498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 16532649 - 16532739
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||| |||||||||||||||||||| |||||||||||||||| | ||||||||| || ||||||||||||||||| |||||||||||||    
T  16532649 caatagcgtgctaaataaaattaggaggtaaatgccctttccgatatctctttgcggtgaatgtttgaataatatcaacatcatcaagtga 16532739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 9256548 - 9256456
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||||||||| |||||| | ||| |||||||||||||||||| ||||| |||| |||||| |||||||||||||    
T  9256548 gtcaatagtgtgctaaataaaattaggaggtaaatgtcatttgcgagacctctttgcgatgaatgttcgaattatatcaacatcatcaagtga 9256456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 14446990 - 14446899
Alignment:
Q  20 tcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||||||||||||||||||||||| | |||| ||||||||||||||||||||  || ||||| ||||||||||| |||||||||||||    
T  14446990 tcaatagtgtgctaaataaaattaggaggtgaatgtcctttccgagacctctttgcagtgaatgttagaataatatcaacatcatcaagtga 14446899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 32372115 - 32372025
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||||||| |||||| |||||  |||||||||||||| || ||||| ||||||||||| |||||||||||||    
T  32372115 caatagtgtgctaaataaaattaggaggtaaatgacctttttgagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtga 32372025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 10014451 - 10014543
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||| ||||||||||||||||||||| |||||||||||||| | | |||||| || || ||||||||||||||||| |||||||||||||    
T  10014451 gtcaataatgtgctaaataaaattaggaggtaaatgccctttccaaaatctctttccggtgaatgtttgaataatatcaacatcatcaagtga 10014543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 30791474 - 30791566
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| || ||||| |||||||||||   |||||||||||    
T  30791474 gtcaatagcgtgctaaataaaattaggtggtaaatgccctttccgagacctctttgcggtgaatgttcgaataatatcaatgtcatcaagtga 30791566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 40146028 - 40146116
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagt 109  Q
    ||||||||||||||||||||||||||| || ||||| |||||||||||||||||   || ||||| ||||||||||| |||||||||||    
T  40146028 caatagtgtgctaaataaaattaggaggtagatgccatttccgagacctctttgttgtgaatgttcgaataatatcaacatcatcaagt 40146116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 32359579 - 32359489
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||||||| |||||| | |||  |||||||||||||  || ||||| ||||||||||| |||||||||||||    
T  32359579 caatagtgtgctaaataaaattaggaggtaaatgacatttttgagacctctttgcagtgaatgttcgaataatatcaacatcatcaagtga 32359489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 27190928 - 27190838
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||| ||||||||||||||||| |||||| |||||| ||||| |||||||| || || || || |||||||| |||||||||||||    
T  27190928 caatagtgtactaaataaaattaggaggtaaatgtcctttctgagacatctttgcggtgaatattcgagtaatatcaacatcatcaagtga 27190838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 32342973 - 32342883
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||| |||||||||||||||||||||| |||||| |||||  ||||||| |||||  || ||||| ||||||||||| |||||||||||||    
T  32342973 caatggtgtgctaaataaaattaggaggtaaatgacctttttgagacctttttgcagtgaatgttcgaataatatcaacatcatcaagtga 32342883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 32355460 - 32355370
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||| |||||||||||||||||||||| |||||| |||||  ||||||| |||||  || ||||| ||||||||||| |||||||||||||    
T  32355460 caatggtgtgctaaataaaattaggaggtaaatgacctttttgagacctttttgcagtgaatgttcgaataatatcaacatcatcaagtga 32355370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 233
Target Start/End: Complemental strand, 14051302 - 14051216
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtgg 233  Q
    ||||| ||||||||||| | ||||| |||| ||||||||||| ||  ||||||||||| ||||||||||||  ||||||||||||||    
T  14051302 agtggcttaatgggctattaggttgggccaaatataaagaaaatactgattgagcccgtgcaagtgcccggactcgccgggtggtgg 14051216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 21958669 - 21958579
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||| |||||||||||||||||||| ||||| ||||||||| |||||||||    |  ||||| ||||||||||| |||||||||||||    
T  21958669 caatagcgtgctaaataaaattaggaggtaaattccctttccgcgacctcttttgagttaatgttcgaataatatcaacatcatcaagtga 21958579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 2826326 - 2826418
Alignment:
Q  23 atagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtgagaaattt 118  Q
    ||||||||||||||||||||||    ||||||||| | |||| ||||||||||| || ||||| ||||||||||| ||| ||||| ||||||||||    
T  2826326 atagtgtgctaaataaaattaga---taaatgcccatgccgatacctctttgcggtgaatgttcgaataatatcaacattatcaaatgagaaattt 2826418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 34228245 - 34228337
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||| |||| |||||||||| ||||| |||||||  ||||| ||||||||||| | |  ||||| ||||||||||| |||||||||||||    
T  34228245 gtcaataatgtgataaataaaatgaggaggtaaatgcaatttccaagacctctttgtggtaaatgttcgaataatatcaacatcatcaagtga 34228337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 24333876 - 24333781
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatg---gatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||| | ||| ||||| | |||||||||||||||||| | ||    ||||| ||||||||| | |||||||||||||    
T  24333876 gtcaatagtgtgctaaataaaatcatgaggtaaattctctttccgagacctctttgtggtgaataatgttcgaataatattaacatcatcaagtga 24333781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 32342825 - 32342759
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgc 213  Q
    ||||||||||||| ||| |||||||  ||  ||||||||||||||||||||||||||| || |||||    
T  32342825 agtgggttaatggactattgggttggacctaatataaagaaagtatcgattgagcccgagcgagtgc 32342759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 32355312 - 32355246
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgc 213  Q
    ||||||||||||| ||| |||||||  ||  ||||||||||||||||||||||||||| || |||||    
T  32355312 agtgggttaatggactattgggttggacctaatataaagaaagtatcgattgagcccgagcgagtgc 32355246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 32359430 - 32359364
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgc 213  Q
    ||||||||||||| ||| |||||||  ||  ||||||||||||||||||||||||||| || |||||    
T  32359430 agtgggttaatggactattgggttggacctaatataaagaaagtatcgattgagcccgagcgagtgc 32359364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 32371966 - 32371900
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgc 213  Q
    ||||||||||||| ||| |||||||  ||  ||||||||||||||||||||||||||| || |||||    
T  32371966 agtgggttaatggactattgggttggacctaatataaagaaagtatcgattgagcccgagcgagtgc 32371900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 34230217 - 34230295
Alignment:
Q  157 tgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtggaa 235  Q
    ||||||| | ||||| | ||||||||||||||||||| ||||||||||||| | ||  || ||||||| ||||||||||    
T  34230217 tgggctattaggttgggtcatatataaagaaagtatcaattgagcccgggcgaatgttcgaggtcgccaggtggtggaa 34230295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 10397166 - 10397215
Alignment:
Q  183 aagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtg 232  Q
    |||||| |||||||||||||||||| ||||||||| ||||||||| ||||    
T  10397166 aagaaattatcgattgagcccgggcgagtgcccggagtcgccgggcggtg 10397215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 24592610 - 24592659
Alignment:
Q  182 aaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggt 231  Q
    ||||||||||| ||||||||||||||| ||||||||  ||||||||||||    
T  24592610 aaagaaagtatggattgagcccgggcacgtgcccggactcgccgggtggt 24592659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 30794384 - 30794468
Alignment:
Q  148 gtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtg 232  Q
    |||| ||||||||||| ||||||| | ||  ||||||| || || |||||||||||||||  ||||||||||| |||||| ||||    
T  30794384 gtggcttaatgggctattgggttgggtcaactataaagcaattaccgattgagcccgggcgggtgcccggggtggccgggaggtg 30794468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 28846773 - 28846723
Alignment:
Q  10 acatcatcagtcaatagtgtgctaaataaaattaggagctaaatgcccttt 60  Q
    |||| ||| ||||| ||||||||||||||||||| ||| ||||||||||||    
T  28846773 acataatctgtcaaaagtgtgctaaataaaattatgaggtaaatgcccttt 28846723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 10467910 - 10467865
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccga 64  Q
    ||||||| ||||||||||||||||| ||| ||||| ||||||||||    
T  10467910 gtcaatattgtgctaaataaaattatgaggtaaataccctttccga 10467865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 2826474 - 2826522
Alignment:
Q  174 ccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcg 222  Q
    |||||||||||| | |||| ||||||||||| || ||||||||||||||    
T  2826474 ccatatataaagcaggtattgattgagcccgagcgagtgcccggggtcg 2826522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 24592355 - 24592387
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaat 53  Q
    ||||||||||||||||||||||||||| |||||    
T  24592355 caatagtgtgctaaataaaattaggaggtaaat 24592387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 42447084 - 42447048
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgc 55  Q
    |||| |||||||||||||||||||||||| |||||||    
T  42447084 gtcattagtgtgctaaataaaattaggaggtaaatgc 42447048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 31944775 - 31944683
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||    
T  31944775 gtcaatagtgtactaaataaaattaggaggtaaatgccctttccgagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtga 31944683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 3074526 - 3074436
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |||||  |||||||||| |||||||||||||    
T  3074526 caatagtgtgctaaataaaattaggagataaatgcccttcctgagacctctttgcgatgaatgttcaaataatatcaacatcatcaagtga 3074436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 53693052 - 53693141
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtg 110  Q
    |||||||||||||||| |||||| ||| | ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  53693052 caatagtgtgctaaatgaaattaagaggtgaatgccctttccgagacctctttgcgatgaatgttcgaataatatcaacatcatcaagtg 53693141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 12211244 - 12211330
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaa 107  Q
    ||||||||||||||||||||||||||| |||||| | ||| ||||||||| |||  ||| ||||| ||||||||||| |||||||||    
T  12211244 caatagtgtgctaaataaaattaggaggtaaatgtcattttcgagacctcattgaaatgaatgttcgaataatatcaacatcatcaa 12211330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 8897944 - 8898034
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||| ||||||||||||||||||| |||||   ||||| |||||||||||||| || ||| | ||||||||||| ||||||| |||||    
T  8897944 caatagtttgctaaataaaattaggaggtaaatagtctttctgagacctctttgcggtgaatgctcgaataatatcaacatcatccagtga 8898034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 4325570 - 4325480
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtg 110  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| ||||| | | |||  || |||||  |||||||||| ||||||||||||    
T  4325570 gtcaatagtgtgctaaataaaattaggaggtaattgccctttctgagacat-tctgctgtgaatgttcaaataatatcaacatcatcaagtg 4325480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 1147658 - 1147584
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataat 93  Q
    |||||||||||  |||| ||||||||||| ||||| | ||||||||||||||||||| ||| ||||| |||||||    
T  1147658 gtcaatagtgttttaaagaaaattaggaggtaaatactctttccgagacctctttgcaatgaatgttcgaataat 1147584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 27365012 - 27364950
Alignment:
Q  49 taaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||||||| |||||||||||| || || ||||| ||||||||||| |||||||||||||    
T  27365012 taaatgcccttttcgagacctcttttcggtgaatgttcgaataatatcaacatcatcaagtga 27364950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 25182896 - 25182949
Alignment:
Q  20 tcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctcttt 73  Q
    ||||||||||||||||||||||||| || ||||| |||||| ||||||||||||    
T  25182896 tcaatagtgtgctaaataaaattagaaggtaaatacccttttcgagacctcttt 25182949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 12211917 - 12211999
Alignment:
Q  152 gttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtggaa 235  Q
    ||||||| | || ||||||| ||||||||||| |||||||||||||||||||  || |||| | ||||||||||| ||||||||    
T  12211917 gttaatgagatattgggttgtgccatatataa-gaaagtatcgattgagcccaagcgagtgtctggggtcgccggatggtggaa 12211999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 10632662 - 10632754
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatg--gatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||| ||||||||||||||| ||||||   |||||||||| |||||||| ||   ||||| |||||| || | |||||||||||||    
T  10632662 caatagtgtgcaaaataaaattaggaggtaaatgatatttccgagacttctttgcggtgaaaatgttcgaataacattaacatcatcaagtga 10632754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 48130134 - 48130099
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatg 54  Q
    ||||||||||||||||||||||||||||| ||||||    
T  48130134 gtcaatagtgtgctaaataaaattaggaggtaaatg 48130099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 3240296 - 3240380
Alignment:
Q  25 agtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagt 109  Q
    ||||| |||||||||||||||||  ||||  | ||| ||||| ||||||||| || || || ||||| ||||| |||||||||||    
T  3240296 agtgtactaaataaaattaggaggcaaataacattttcgagatctctttgcggtgaatattcgaatattatcaacatcatcaagt 3240380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 20113868 - 20113780
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtggaa 235  Q
    |||| |||||| ||||  |||||||| ||  || |||||||| |||||||||||  ||||| |||| ||||||||||| || |||||||    
T  20113868 agtgtgttaatcggcttttgggttgaacctaatgtaaagaaattatcgattgagttcgggcgagtgtccggggtcgccaggcggtggaa 20113780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 42843860 - 42843774
Alignment:
Q  28 gtgctaaataaaattaggagctaaatgccctttccgaga---cctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||||||||||||||  | ||||||||  ||||||   |||||||| | || ||||| || |||||||| |||||||||||||    
T  42843860 gtgctaaataaaattaggatgtcaatgccctccccgagacctcctctttgtggtgaatgttcgattaatatcaacatcatcaagtga 42843774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 43874903 - 43874955
Alignment:
Q  180 ataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtg 232  Q
    ||||||||| |||| ||||||| ||||| ||| |||||||||||||| |||||    
T  43874903 ataaagaaaatatcaattgagctcgggcgagtacccggggtcgccggatggtg 43874955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 55464685 - 55464768
Alignment:
Q  28 gtgctaaataaaattaggagctaaatgccctttccgagacctctttgcga-tggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||||||||||||||| || ||||| ||| ||   ||||||| ||| || ||||| ||||||||||| |||||||||||||    
T  55464685 gtgctaaataaaattaggaggtagatgcctttttcgtagcctcttt-cgagtgaatgttcgaataatatcaacatcatcaagtga 55464768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 22712917 - 22713007
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| || ||||||||||||||||| |||||||||||||    
T  22712917 caatagtgtgctaaataaaattaggaggtaaatgctctttctgagacctctttgcggtgaatgtttgaataatatcaacatcatcaagtga 22713007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 204009 - 203917
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| || || ||||| ||||||||||| |||||||||||||    
T  204009 gtcaatagtgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttccggtgaatgttcgaataatatcaacatcatcaagtga 203917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 1280522 - 1280445
Alignment:
Q  34 aataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||||||||| |||||||| ||||||||||||||||||| || ||||| ||||||||||| |||||||||||||    
T  1280522 aataaaattaggaggtaaatgccttttccgagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtga 1280445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 27168821 - 27168911
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||||||| ||||||||||||  |||||||| || || || ||||| ||||||||||| ||| |||||||||    
T  27168821 caatagtgtgctaaataaaattaggaggtaaatgccctttatgagacctcatttcggtgaatgttcgaataatatcaacattatcaagtga 27168911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 3055641 - 3055553
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaa 107  Q
    ||||||||||||||||||||||||||||| |||||||| |||  |||||||| |||||  | ||||| ||||||||||| |||||||||    
T  3055641 gtcaatagtgtgctaaataaaattaggaggtaaatgccatttatgagacctcattgcgcggaatgttcgaataatatcaacatcatcaa 3055553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 192016 - 191938
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgg 226  Q
    ||||||||||||||||| ||| ||| | ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  192016 agtgggttaatgggctattgg-ttgtgtcatatataaagaaagtaccgattgaacccgggcaaatgcccggggtcgccgg 191938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 235
Target Start/End: Complemental strand, 1279832 - 1279745
Alignment:
Q  148 gtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtggaa 235  Q
    |||||||||||||||| || |||| | |||||||||||||||||||||||||| |||||||| || | | |||||| |||||||||||    
T  1279832 gtgggttaatgggctattgagttgggtcatatataaagaaagtatcgattgagtccgggcaaatgtctgaggtcgctgggtggtggaa 1279745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 147 - 229
Target Start/End: Original strand, 42615048 - 42615130
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtg 229  Q
    ||||| ||||||| ||| |||||||| ||| ||||||||||||||||||||||| |||| | |||| ||||||||||||||||    
T  42615048 agtggattaatggactattgggttgaaccaaatataaagaaagtatcgattgagtccggacgagtgtccggggtcgccgggtg 42615130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 11852874 - 11852781
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtgag 112  Q
    |||||||||||||||||||||||||| || ||||| | |||||  ||||||||||| | |  ||||| ||||||||||| ||||||||||||||    
T  11852874 gtcaatagtgtgctaaataaaattagaaggtaaatactctttcttagacctctttgtgttaaatgttcgaataatatcaacatcatcaagtgag 11852781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 19518970 - 19519050
Alignment:
Q  31 ctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||| | |||||| ||||||| | ||||||||||| || ||||| ||||||||||| |||||||||||||    
T  19518970 ctaaataaaattaggtggtaaatgacctttccaatacctctttgcggtgaatgttcgaataatatcaacatcatcaagtga 19519050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 23244586 - 23244678
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||||||| ||||||||||||| || || |||||||||| |||||||| ||||| |  |||||  |||||||||| |||||||||||||    
T  23244586 gtcaatagtgtggtaaataaaattagcaggtacatgccctttctgagacctcgttgcggttaatgttcaaataatatcaacatcatcaagtga 23244678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 2229072 - 2228986
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgag-acctctttgcgatggatgtttgaataatatcagcatcatcaa 107  Q
    |||||| |||||||||||||||||||| ||||||||| |||| || |||||||||||||| |||||  |||||||||| |||||||||    
T  2229072 caatagcgtgctaaataaaattaggaggtaaatgccc-ttcctagaacctctttgcgatgaatgttcaaataatatcaacatcatcaa 2228986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 26540674 - 26540763
Alignment:
Q  22 aatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||| |||||| ||||||||||||| ||||||||||||| ||||  |||||||| || ||||| |||||||||||   |||||||||||    
T  26540674 aatagcgtgctagataaaattaggaggtaaatgccctttctgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtga 26540763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 22542043 - 22541953
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatgg-atgtttgaataatatcagcatcatcaagtga 111  Q
    |||||| |||||||||||||||| ||| ||||||||||||||| ||||||||| ||| || ||||| ||||||||| | ||||||| |||||    
T  22542043 caatagcgtgctaaataaaattatgaggtaaatgccctttccgcgacctcttt-cgagggaatgttcgaataatattaacatcatcgagtga 22541953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 8785941 - 8785853
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaa 107  Q
    ||||||| | ||||||||||||||||||| |||   |||||| |||||||| |||||| || ||||| |||||||||||  ||||||||    
T  8785941 gtcaataatatgctaaataaaattaggaggtaagaacccttttcgagacctatttgcggtgaatgttcgaataatatcaatatcatcaa 8785853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 38269506 - 38269589
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtg 232  Q
    |||||||||| |  ||| |||||||  |||| |||||||||||| | ||||||||||||  |||||||||| ||||||||| ||||    
T  38269506 agtgggttaacgaactattgggttgtaccatgtataaagaaagtgttgattgagcccgg--aagtgcccggagtcgccgggcggtg 38269589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 227
Target Start/End: Complemental strand, 37169028 - 37168999
Alignment:
Q  198 gagcccgggcaagtgcccggggtcgccggg 227  Q
    ||||||||||||||||||||||||||||||    
T  37169028 gagcccgggcaagtgcccggggtcgccggg 37168999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 192116 - 192060
Alignment:
Q  20 tcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcg 76  Q
    ||||||||||| ||||||||||||| || |||||  | ||||||| |||||||||||    
T  192116 tcaatagtgtgttaaataaaattagaaggtaaatatcttttccgaaacctctttgcg 192060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 3051022 - 3050930
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| || || ||||||||||||||||| |||||||||||||    
T  3051022 gtcaatagtgtgctaaataaaattaggtggtaaatgctctttccgagacctctttccggtgaatgtttgaataatatcaacatcatcaagtga 3050930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 32441992 - 32442082
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||| |||||||||||||||||| ||| |||||||||||||||| ||||||||| |||| ||||| ||||||||||| |||||||||||||    
T  32441992 caatggtgtgctaaataaaattaagaggtaaatgccctttccgatacctctttgggatgaatgttcgaataatatcaacatcatcaagtga 32442082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 12180541 - 12180633
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||| |||||||||||||||||| || ||||||||||| |||||||||||||||| || ||||| ||||||||||| || ||||||||||    
T  12180541 gtcaataatgtgctaaataaaattagaaggtaaatgcccttcccgagacctctttgcggtgaatgttcgaataatatcaacaacatcaagtga 12180633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 30621324 - 30621240
Alignment:
Q  26 gtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||    
T  30621324 gtgtgttaaataaaattaggaggtaaatgtcctttccgagacctcttt-cgatgaatgttcgaataatatcaacatcatcaagtga 30621240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 11971118 - 11971027
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| || || ||||| | | ||||||| |||||||||||||    
T  11971118 gtcaatagtgtgctaaataaaattaggaggtaaatgccctttctgagacctcttt-cggtgaatgttcgcaaaatatcaacatcatcaagtga 11971027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 25599312 - 25599219
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgc---gatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||||| ||||| |||||||||  |||||||||||||||||||||||||||   |||| ||||| ||||||||||| |||||||||||||    
T  25599312 caatagtgtgttaaatcaaattaggacgtaaatgccctttccgagacctctttgcgatgatgaatgttcgaataatatcaacatcatcaagtga 25599219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 4231742 - 4231828
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtgg 233  Q
    ||||| ||||||| ||| | ||||| |||| |||||||||||||||||||||||  ||||| |||||| | ||||||||||||||||    
T  4231742 agtggattaatggactatttggttgggccaaatataaagaaagtatcgattgagttcgggcgagtgccggaggtcgccgggtggtgg 4231828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 25340601 - 25340512
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||||| ||| |||||||||||| ||||||| ||||| |||||||||||  | || ||||| ||||||||||| |||||||||||||    
T  25340601 caatagtgtgttaa-taaaattaggaggtaaatgcactttctgagacctctttatggtgaatgttcgaataatatcaacatcatcaagtga 25340512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 6418799 - 6418885
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtgg 233  Q
    ||||| |||||| |||| | ||||| || | ||||||||||||| |||||||||||||||| |||||||| | | ||||||||||||    
T  6418799 agtggcttaatgagctatttggttgggcgaaatataaagaaagtgtcgattgagcccgggcgagtgcccgagcttgccgggtggtgg 6418885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 1296664 - 1296576
Alignment:
Q  23 atagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||| |||||||||| ||||| |||||| ||||||||||||||||||    || || |||||||||||| |  ||||||||||||    
T  1296664 atagtgtggtaaataaaataaggaggtaaatggcctttccgagacctctttattgtgaatatttgaataatattaatatcatcaagtga 1296576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 24074562 - 24074481
Alignment:
Q  28 gtgctaaataaaattaggagctaaatgccctttccgagacctctttgc-gatggatgtttgaataatatcagcatcatcaagt 109  Q
    |||||||||||||||||||| ||||||  | ||||||||||||||| | | || ||||| ||||||||||| |||||||||||    
T  24074562 gtgctaaataaaattaggaggtaaatg-tcattccgagacctctttccggttgaatgttcgaataatatcaacatcatcaagt 24074481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 24697907 - 24697992
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtg 232  Q
    |||| |||||||||||  ||||||| |||  || | || ||| |||||||||||||||||| |||| |||||||||||||| ||||    
T  24697907 agtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcgagtgtccggggtcgccgggcggtg 24697992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 22258344 - 22258416
Alignment:
Q  148 gtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggt 220  Q
    |||| ||||||||||| |||||||   ||  ||||||| ||||| |||||||||||||||  |||||||||||    
T  22258344 gtggcttaatgggctattgggttggatcaactataaagcaagtaccgattgagcccgggcgggtgcccggggt 22258416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 134871 - 134962
Alignment:
Q  20 tcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||| || || ||||| ||||||||||| |||||||||||||    
T  134871 tcaatagcgtgctaaataaaattaggaggtaaatgccctttccgagacctctttccggtgaatgttcgaataatatcaacatcatcaagtga 134962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 9637279 - 9637188
Alignment:
Q  20 tcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||| || |||||  |||||||||| |||||||||||||    
T  9637279 tcaatagtgtgctaaataaaattaggatgtaaatgccctttccgagacctctttgcggtgaatgttcaaataatatcaacatcatcaagtga 9637188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 25017545 - 25017453
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||||||||| || |||||||||| |||||||||||||| || | ||| ||||||||||| |||||||||||||    
T  25017545 gtcaatagtgtgctaaataaaattaggaggtatatgccctttctgagacctctttgcggtgaacgttcgaataatatcaacatcatcaagtga 25017453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 26272947 - 26273037
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||||||||||||||||||| || ||| ||||||||||||||||| ||||||||| ||||| ||||||||| | |||||||| ||||    
T  26272947 caatagtgtgctaaataaaattagtaggtaattgccctttccgagacctgtttgcgatgaatgttcgaataatattaacatcatcacgtga 26273037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 52753836 - 52753921
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaa 107  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||   ||||| ||||||||||| |||||||||    
T  52753836 gtcaatagtgtgctagataaaattaggaggtaaataccctttccgagacctctttgcga---atgttcgaataatatcaacatcatcaa 52753921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 40864738 - 40864827
Alignment:
Q  22 aatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||||||||||||||||||||| |||||||||||||  | ||||||||||| || ||||| ||||||||||| ||| |||||||||    
T  40864738 aatagtgtgctaaataaaattaggaggtaaatgccctttctaaaacctctttgcggtgaatgttcgaataatatcaacattatcaagtga 40864827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 14499056 - 14498968
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaa 107  Q
    |||||||||||  |||||| ||||||||| |||||| |||||| ||||||||||||||||| ||||| ||||||||||| |||||||||    
T  14499056 gtcaatagtgttttaaatataattaggaggtaaatgtcctttctgagacctctttgcgatgaatgttcgaataatatcaacatcatcaa 14498968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 17874937 - 17874845
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||||||| ||||||||||||| || ||||||  |||| ||||||||||||||| || ||||||||||||||||| ||||||| |||||    
T  17874937 gtcaatagtgtggtaaataaaattagaaggtaaatgatcttttcgagacctctttgcggtgaatgtttgaataatatcaacatcatccagtga 17874845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 48606630 - 48606718
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagt 109  Q
    ||||||||||||||||||||||| ||| |||||||||||||  ||||||||||||| ||  |||||||||||||||| ||| |||||||    
T  48606630 caatagtgtgctaaataaaattatgaggtaaatgccctttcgaagacctctttgcggtgagtgtttgaataatatcaacattatcaagt 48606718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 32379872 - 32379963
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||||||||| |||||| | ||| ||| ||||||||||| |  ||||| ||||||||||| |||||||||||||    
T  32379872 gtcaatagtgtgctaaataaaattaggaggtaaatgtcattttcgatacctctttgcg-taaatgttcgaataatatcaacatcatcaagtga 32379963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 35948998 - 35949086
Alignment:
Q  23 atagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||| |||| ||||||||||||||| |||||| |||||||||||||||||| || || ||||| |||||| |||| |||||||||||||    
T  35948998 atagcgtgcaaaataaaattaggaggtaaatgtcctttccgagacctcttttcggtgaatgttcgaataacatcaacatcatcaagtga 35949086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 28463252 - 28463197
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcg 76  Q
    ||||||||||||||||||||||||||| | |||||||||||| |||||||||||||    
T  28463252 caatagtgtgctaaataaaattaggaggtgaatgccctttccaagacctctttgcg 28463197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 21973814 - 21973896
Alignment:
Q  29 tgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||| ||||||||||||| ||||||||||||||||||  |||||||| || ||||| |||||||||||   |||||||||||    
T  21973814 tgctagataaaattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtga 21973896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 30559023 - 30559113
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||||||| |||||  | |||  |||| || ||| || || ||||| |||||||||||||||||||||||||    
T  30559023 caatagtgtgctaaataaaattaggaggtaaatatcatttatgagatctatttacggtgaatgttcgaataatatcagcatcatcaagtga 30559113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 26273639 - 26273723
Alignment:
Q  151 ggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtggaa 235  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||||||| ||  ||||| |||| || |||||| ||| ||||||||    
T  26273639 ggttaattggctattgggttgggccatatataaagaaagtatcgattaagtacgggcgagtgtccagggtcgtcggatggtggaa 26273723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 11843917 - 11843972
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcg 76  Q
    ||||||||||||||||||||||||||| |||||| |||||| ||||||| ||||||    
T  11843917 caatagtgtgctaaataaaattaggaggtaaatgtcctttcagagacctatttgcg 11843972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 33330795 - 33330742
Alignment:
Q  179 tataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtg 232  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||| |||||||||    
T  33330795 tataaagaaagtatcgattgagctcgggcgagtacccggggtcgtcgggtggtg 33330742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 17874788 - 17874703
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtg 232  Q
    |||| |||||||||||| |||||||  ||   |||||||||||||| |||||||||| |  ||||| |||||||||||||| ||||    
T  17874788 agtgagttaatgggctattgggttggacctagtataaagaaagtattgattgagcccagataagtgtccggggtcgccgggcggtg 17874703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 33489862 - 33489827
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatg 54  Q
    ||||||||||||||||||||||||||||| ||||||    
T  33489862 gtcaatagtgtgctaaataaaattaggaggtaaatg 33489827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 41972267 - 41972302
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatg 54  Q
    ||||||||||||||||||||||||||||| ||||||    
T  41972267 gtcaatagtgtgctaaataaaattaggaggtaaatg 41972302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 30054980 - 30054923
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcg 76  Q
    ||||||| ||||||||||||||||||||| |||||| | |||  || |||||||||||    
T  30054980 gtcaataatgtgctaaataaaattaggaggtaaatgtcatttatgatacctctttgcg 30054923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 1040 - 954
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaa 107  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| || ||||| ||||||||||| |||||||||    
T  1040 caatagtgtgctaaataaaattaggagataaatgccctttcggagacctctttgcggtgaatgttcgaataatatcaacatcatcaa 954  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 24988831 - 24988917
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaa 107  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||    
T  24988831 caatagtgtgctaaataaaattaggagatacatgccctttccgagacctctttgcggtgaatgttcgaataatatcaacatcatcaa 24988917  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 51262138 - 51262046
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||||||||| ||||||  |||| | |||||||||| ||||| ||||| ||||||||||| |||||||||||||    
T  51262138 gtcaatagtgtgctaaataaaattaggaggtaaatgttcttttcaagacctctttacgatgaatgttcgaataatatcaacatcatcaagtga 51262046  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 53710557 - 53710465
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcga-tggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| ||| || ||||| ||||||||||| |||||||||||||    
T  53710557 gtcaatagcgtgctaaataaaattaggaggtaaatgccctttccgtgacctcttt-cgagtgaatgttcgaataatatcaacatcatcaagtga 53710465  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 3856894 - 3856980
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaa 107  Q
    ||||| ||||||||||||||||||||| |||||   ||||| |||||||||||||| || ||||||||||||||||| |||||||||    
T  3856894 caataatgtgctaaataaaattaggaggtaaattttctttctgagacctctttgcggtgaatgtttgaataatatcaacatcatcaa 3856980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 233
Target Start/End: Complemental strand, 20610092 - 20610006
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtgg 233  Q
    ||||||||||||||||| |||| ||| | | |||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||    
T  20610092 agtgggttaatgggctattgggctgaacaaaatataaagaaagtatcgattaagctcgggcgagtgcccggggtcgtcgggtggtgg 20610006  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 31989179 - 31989096
Alignment:
Q  28 gtgctaaataaaattaggagctaaatgccctttccgagacctctttgcga-tggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| ||| || ||||| ||||||||||| |||||||||||||    
T  31989179 gtgctaaataaaattaggaggtaaatgccctttccgcgacctcttt-cgagtgaatgttcgaataatatcaacatcatcaagtga 31989096  T

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Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 22934816 - 22934907
Alignment:
Q  20 tcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||  |||| ||||||| ||| |||||| ||||||||||||||||||||| || |||||  |||||||||| |||||||||||||    
T  22934816 tcaatagtgtcttaaacaaaattaagaggtaaatgacctttccgagacctctttgcggtgaatgttctaataatatcaacatcatcaagtga 22934907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 43137283 - 43137194
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||||||| ||||| || |||| |||||||| |||||  | ||||| ||||||||||| |||||||||||||    
T  43137283 caatagtgtgctaaataaaattaggaggtaaataccttttctgagacctc-ttgcggcgaatgttcgaataatatcaacatcatcaagtga 43137194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 233
Target Start/End: Complemental strand, 17036264 - 17036178
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtgg 233  Q
    ||||||||||| ||||| |||||||  | | |||||||||||| ||||||||||||||||| |||| |||| |||||||| ||||||    
T  17036264 agtgggttaataggctattgggttggccgaaatataaagaaagaatcgattgagcccgggcgagtgtccggtgtcgccggatggtgg 17036178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 38282563 - 38282510
Alignment:
Q  22 aatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgc 75  Q
    |||||||||||||||||||||| ||| ||||||| |||||||||||||||||||    
T  38282563 aatagtgtgctaaataaaattatgaggtaaatgctctttccgagacctctttgc 38282510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 37381885 - 37381973
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaa 107  Q
    |||||||| ||||| ||||||||||||||  ||||| | ||||||||||||||||||  || ||||| ||||||||| | |||||||||    
T  37381885 gtcaatagcgtgctgaataaaattaggaggcaaatgtcatttccgagacctctttgcagtgaatgttcgaataatataaacatcatcaa 37381973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 24908412 - 24908498
Alignment:
Q  22 aatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcga-tggatgtttgaataatatcagcatcatcaag 108  Q
    ||||| |||||||||||||||||||| ||||| ||||||||| ||||||||| ||| || ||||| ||||||||||| |||| |||||    
T  24908412 aatagcgtgctaaataaaattaggaggtaaataccctttccgcgacctcttt-cgagtgaatgttcgaataatatcaacatcttcaag 24908498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 2983653 - 2983706
Alignment:
Q  179 tataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtg 232  Q
    |||||||||| ||||||||||||||||||||   ||||||||||||||||||||    
T  2983653 tataaagaaaatatcgattgagcccgggcaaaatcccggggtcgccgggtggtg 2983706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 37382977 - 37383030
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgag 200  Q
    ||||||||||||||||| |||||||  ||||||||| |||||||||||||||||    
T  37382977 agtgggttaatgggctattgggttggaccatatatacagaaagtatcgattgag 37383030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 15668111 - 15668040
Alignment:
Q  40 attaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||| |||||||| ||||||| |||||||||   || ||||| ||||||||||| |||||||||||||    
T  15668111 attaggaggtaaatgccttttccgatacctctttgttgtgcatgttcgaataatatcaacatcatcaagtga 15668040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 43135257 - 43135203
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagc 201  Q
    ||||||||||||| ||| ||  ||| |||||||||||||||||||||||||||||    
T  43135257 agtgggttaatggactattgcattgggccatatataaagaaagtatcgattgagc 43135203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 51408625 - 51408667
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttc 61  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  51408625 gtcaatagcgtgctaaataaaattaggaggtaaatgccctttc 51408667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 22934996 - 22935035
Alignment:
Q  179 tataaagaaagtatcgattgagcccgggcaagtgcccggg 218  Q
    ||||||||||||||||||||||||||| | ||||||||||    
T  22934996 tataaagaaagtatcgattgagcccggacgagtgcccggg 22935035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 38282469 - 38282412
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccg 204  Q
    |||||||||||| | || |||||||  ||||||||||||||||| | |||||||||||    
T  38282469 agtgggttaatgtgttattgggttgtaccatatataaagaaagtgttgattgagcccg 38282412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 8175700 - 8175784
Alignment:
Q  148 gtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtg 232  Q
    |||| |||||||| || ||||||| | ||  ||||||| ||||| ||||||||||| |||  ||||||||||| |||||| ||||    
T  8175700 gtggtttaatgggatattgggttgggtcaactataaagcaagtaccgattgagcccaggcgggtgcccggggtggccgggaggtg 8175784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 226
Target Start/End: Original strand, 20382651 - 20382679
Alignment:
Q  198 gagcccgggcaagtgcccggggtcgccgg 226  Q
    |||||||||||||||||||||||||||||    
T  20382651 gagcccgggcaagtgcccggggtcgccgg 20382679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 17899 - 17807
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||| || ||||| ||||||||||| ||||| |||||||    
T  17899 gtcaatagtgtgctaaataaaattaggagttaaatgtcctttcggagacctctttgcggtgaatgttcgaataatatcaacatcagcaagtga 17807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 12539732 - 12539640
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||||||||||| ||||||  |||||| ||||||||||||| || ||||| ||||||||||| |||||||||||||    
T  12539732 gtcaatagtgtgctaaataaaattaggaggtaaatgttctttccaagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtga 12539640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 19951847 - 19951939
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||||||||||||| ||||||| || |||||||||||| ||||||||||||||| || ||||| ||||||||||| |||||||||||||    
T  19951847 gtcaatagtgtgctaaattaaattagaaggtaaatgcccttttcgagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtga 19951939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 33453206 - 33453296
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||| ||||||||||||||||||| ||||||| ||||| || ||||||||||| || ||||| ||||||||||| |||||||||||||    
T  33453206 caatagtctgctaaataaaattaggaggtaaatgctctttctgatacctctttgcggtgaatgttcgaataatatcaacatcatcaagtga 33453296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 22464826 - 22464737
Alignment:
Q  22 aatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||| |||||| ||||||||||||| |||||||||||| |||||  |||||||| || |||||||||||||||||   |||||||||||    
T  22464826 aatagcgtgctagataaaattaggaggtaaatgcccttttcgagatttctttgcggtgaatgtttgaataatatcaatgtcatcaagtga 22464737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 22483705 - 22483616
Alignment:
Q  22 aatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||||  |||||||| || ||||| |||||||||||   |||||||||||    
T  22483705 aatagcgtgctagataaaattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtga 22483616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 34526508 - 34526419
Alignment:
Q  22 aatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||||  |||||||| || ||||| |||||||||||   |||||||||||    
T  34526508 aatagcgtgctagataaaattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtga 34526419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 7886675 - 7886748
Alignment:
Q  20 tcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataat 93  Q
    |||||||||||||||||||||||||||| ||| || |||||| || || |||||||| || |||||||||||||    
T  7886675 tcaatagtgtgctaaataaaattaggaggtaagtgacctttctgaaacttctttgcggtgaatgtttgaataat 7886748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 19952541 - 19952624
Alignment:
Q  149 tgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtg 232  Q
    ||||||||||||||| || | || | |||||||||||||| ||||||||||| || ||| |||| | |||||||||||||||||    
T  19952541 tgggttaatgggctattgaggtgggtcatatataaagaaaatatcgattgagtccaggcgagtgtctggggtcgccgggtggtg 19952624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 45121389 - 45121334
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcg 76  Q
    ||||||||| ||||||||||||||||| |||||| | |||||||||||||||||||    
T  45121389 caatagtgttctaaataaaattaggaggtaaatgtcttttccgagacctctttgcg 45121334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 31392554 - 31392504
Alignment:
Q  24 tagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttg 74  Q
    |||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  31392554 tagtgtgctaaataaaattaagaggtaaatgcccttttcgagacctctttg 31392504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 35649688 - 35649764
Alignment:
Q  31 ctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaa 107  Q
    ||||||||||||||||  |||||| ||||| ||||| ||||||||  || |||||| |||||||||| |||||||||    
T  35649688 ctaaataaaattaggaagtaaatgtccttttcgagatctctttgcagtgaatgtttcaataatatcaacatcatcaa 35649764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 34317491 - 34317546
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcg 76  Q
    |||||||||||||| |||||||||||| ||||||| ||||  ||||||||||||||    
T  34317491 caatagtgtgctaattaaaattaggaggtaaatgctctttttgagacctctttgcg 34317546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 13308840 - 13308783
Alignment:
Q  54 gccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||||||||||||||||||  | || ||||| ||||||||||| |||||||||||||    
T  13308840 gccctttccgagacctctttatggtgaatgttcgaataatatcaacatcatcaagtga 13308783  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 18426150 - 18426203
Alignment:
Q  179 tataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtg 232  Q
    ||||||||||||||||||||||||||| ||| || ||||||| ||| |||||||    
T  18426150 tataaagaaagtatcgattgagcccggacaaatgtccggggtagccaggtggtg 18426203  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 24983841 - 24983794
Alignment:
Q  186 aaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtgg 233  Q
    |||||| ||||||||||||||| |||||||| | ||||||||||||||    
T  24983841 aaagtaacgattgagcccgggcgagtgcccgagctcgccgggtggtgg 24983794  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 26656360 - 26656434
Alignment:
Q  22 aatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatca 97  Q
    |||||||||| ||||||||||||||| |||||| || |||  ||| ||||||||| || ||||| |||||||||||    
T  26656360 aatagtgtgcgaaataaaattaggaggtaaatgacc-ttctaagatctctttgcggtgaatgttcgaataatatca 26656434  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 34907723 - 34907652
Alignment:
Q  40 attaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||| |||||||||||| ||| || ||| | ||||| |||||||||| |||||| || ||||||||||    
T  34907723 attaggaggtaaatgcccttttcgaaacttctctccgatgaatgtttgaattatatcaacaccatcaagtga 34907652  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 45121296 - 45121217
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgg 226  Q
    ||||||||||||  ||| || |||| | |||||||||||||||||  ||| ||||| |||||| ||||| ||||||||||    
T  45121296 agtgggttaatgaactattgagttgtgtcatatataaagaaagtactgatcgagcctgggcaaatgcccagggtcgccgg 45121217  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 13309748 - 13309706
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttc 61  Q
    |||||||||||||||||||| |||| ||| |||||||||||||    
T  13309748 gtcaatagtgtgctaaataatattatgaggtaaatgccctttc 13309706  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 18425992 - 18426069
Alignment:
Q  34 aataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||||||||| |||||  | |||  ||||||||||| || || ||||| ||||||||||| ||| |||||||||    
T  18425992 aataaaattaggaggtaaataacatttttgagacctctttacggtgaatgttcgaataatatcaacattatcaagtga 18426069  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 31392955 - 31392926
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagc 48  Q
    ||||||||||||||||||||||||||||||    
T  31392955 gtcaatagtgtgctaaataaaattaggagc 31392926  T

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Target: scaffold0198 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 1551 - 1463
Alignment:
Q  23 atagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||| |||||||||||||||||||  ||||||| |||||||||||||||||| ||| ||||| ||||||||||| |||||||||||||    
T  1551 atagtatgctaaataaaattaggaggcaaatgccatttccgagacctctttgcaatgaatgttcgaataatatcaacatcatcaagtga 1463  T

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Target: scaffold0007 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 260077 - 259985
Alignment:
Q  19 gtcaatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||| || ||||| |||||||||||   |||||||||||    
T  260077 gtcaatagcgtgctaaataaaattaggtggtaaatgccatttccgagacctctttgcggtgaatgttcgaataatatcaatgtcatcaagtga 259985  T

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Target: scaffold0092 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 46403 - 46489
Alignment:
Q  147 agtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtgg 233  Q
    ||||||||||||  ||| | ||||| || | |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||    
T  46403 agtgggttaatgaactatttggttgggcaaaatataaagaaagtatcgattgagcccgggcaaatgcccggggtcaccaggtggtgg 46489  T

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Target: scaffold0168 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 15970 - 15881
Alignment:
Q  22 aatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||||  |||||||| || ||||| |||||||||||   |||||||||||    
T  15970 aatagcgtgctagataaaattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtga 15881  T

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Target: scaffold0012 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 197261 - 197172
Alignment:
Q  22 aatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    ||||| |||||| ||||||||||||| |||||||||||| |||||  |||||||| || |||||||||||||||||   |||||||||||    
T  197261 aatagcgtgctagataaaattaggaggtaaatgcccttttcgagatttctttgcggtgaatgtttgaataatatcaatgtcatcaagtga 197172  T

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Target: scaffold0015 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 214179 - 214269
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 111  Q
    |||||| |||||||||||||||||||| ||||| ||||||||| |||||||||    |  ||||| ||||||||||| |||||||||||||    
T  214179 caatagcgtgctaaataaaattaggaggtaaattccctttccgcgacctcttttgagttaatgttcgaataatatcaacatcatcaagtga 214269  T

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Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 435366 - 435417
Alignment:
Q  21 caatagtgtgctaaataaaattaggagctaaatgccctttccgagacctctt 72  Q
    ||||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  435366 caatagtgtgctaaataaaattaggaggtaaatgtccttttcgagacctctt 435417  T

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