View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5681_low_13 (Length: 308)
Name: NF5681_low_13
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5681_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 294
Target Start/End: Original strand, 1437953 - 1438234
Alignment:
| Q |
13 |
aaaataaattcacaaaaatcacttttgcgcatccaaaccacaaaccactttacatttaactcacttttaactaaacacaaaccactttacatttaaatat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1437953 |
aaaataaattcacaaaaatcacttttgcgcatccaaaccacaaaccactttacatttaactcacttttaactaaacaaaaaccactttacatttaaatat |
1438052 |
T |
|
| Q |
113 |
tctgtatctgctaatatttttggtaggaagataggatcatatgattgaagaattttaataaatttcagatatagtgatggtgttctgcatcactagatta |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1438053 |
tctgtatctgctaatatttttggtaggaagataggatcatatgattgaagaattttagtaaatttcagatatagtgatggtgttctgcatcactagatta |
1438152 |
T |
|
| Q |
213 |
ggttgtttcttgattgttcagtggttagtgcttaatcccgaacctaggaagttcatagatgaacataattggtgatgataat |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1438153 |
ggttgtttcttgattgttcagtggttagtgcttaatcccgaacctaggaagttcatagatgaacataattggtgatgataat |
1438234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 1444910 - 1444983
Alignment:
| Q |
13 |
aaaataaattcacaaaaatcacttttgcgcatccaaaccacaaaccactttacatttaactcacttttaactaaa |
87 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1444910 |
aaaatgaattcgcaaaaatcacttttgcgcatccaaac-acaaaccacttttcatttaactcacttttaactaaa |
1444983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 141 - 250
Target Start/End: Original strand, 1425108 - 1425213
Alignment:
| Q |
141 |
agataggatcatatgattgaagaattttaataaatttcagatatagtgatggtgttctgcatcactagattaggttgtttcttgattgttcagtggttag |
240 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| |||| |||||||| ||||||||||||| ||| | | ||||||||||| |||||| || |
|
|
| T |
1425108 |
agataggatcatatgattgaagaattataggaaatttcatatatggtgatggttttctgcatcacta-att---tcatatcttgattgtttagtggtgag |
1425203 |
T |
|
| Q |
241 |
tgcttaatcc |
250 |
Q |
| |
|
|||||||||| |
|
|
| T |
1425204 |
tgcttaatcc |
1425213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 1432228 - 1432325
Alignment:
| Q |
140 |
aagataggatcatatgattgaagaattttaataaatttcagatatagtgatggtgttctg--catcactagattaggttgtttcttgattgttcagtg |
235 |
Q |
| |
|
||||||||||||||||||||||| |||||| | | |||| ||| || || |||| || ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1432228 |
aagataggatcatatgattgaagtattttagtgatattcatatacgatgttgatgttgtgtgcatcactagattaggttgtttcttgattgttaagtg |
1432325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 38045330 - 38045361
Alignment:
| Q |
56 |
accactttacatttaactcacttttaactaaa |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38045330 |
accactttacatttaactcacttttaactaaa |
38045361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University