View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5681_low_17 (Length: 237)
Name: NF5681_low_17
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5681_low_17 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 32148019 - 32148244
Alignment:
| Q |
12 |
atcaaaaacaacgttgggaagaaaaccgtaaggtccatccccgaataaaacaactccctttgaagaggaaaggcaaatagcgaattttttagcaaagcta |
111 |
Q |
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| T |
32148019 |
atcaaaaacgacgttggggagaaaaccgtaaggtccatccccgaataaaacaactccctttgaagaggaaagacaaatagcgaattttttagcgaagcta |
32148118 |
T |
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| Q |
112 |
aaagccgaagctaattgagatggaagagctaatttgtttcttccaagaccagccataccagaagcaccacttgcaagtccttttagtaagaaagttcgtg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32148119 |
aaagccgaagctaattgagatggaagagctaatttgtttcttccaagaccagccataccagaagcaccacttgcaagtccttctagtaagaaagttcgtg |
32148218 |
T |
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| Q |
212 |
cacatgagaataggaagcgtgaaacc |
237 |
Q |
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| T |
32148219 |
cacatgagaataggaagcgtgaaacc |
32148244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 32138630 - 32138854
Alignment:
| Q |
13 |
tcaaaaacaacgttgggaagaaaaccgtaaggtccatccccgaataaaacaactccctttgaagaggaaaggcaaatagcgaattttttagcaaagctaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| |
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| T |
32138630 |
tcaaaaacaacgttgggaagaaaaccgtaaggtccatccccgaataaaacaactccctttgaagaggaaagacaaatagcgaattttctagcgaagctaa |
32138729 |
T |
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| Q |
113 |
aagccgaagctaattgagatggaagagctaatttgtttcttccaagaccagccataccagaagcaccacttgcaagtccttttagtaagaaagttcgtgc |
212 |
Q |
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| T |
32138730 |
aagccgaagctagttgagatggaagagctattttggttcttccaagaccagccataccagaagcaccagttgcaagtccttttagtaagaaagttggtgc |
32138829 |
T |
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| Q |
213 |
acatgagaataggaagcgtgaaacc |
237 |
Q |
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| T |
32138830 |
acatgagaataggaagcgtgaaacc |
32138854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 32126944 - 32127070
Alignment:
| Q |
110 |
taaaagccgaagctaattgagatggaagagctaatttgtttcttccaagaccagccataccagaagcaccacttgcaagtccttttagtaagaaagttcg |
209 |
Q |
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||||||| ||||||| ||||||||||||||| | |||| ||||||||||||||||||| ||||||||||||| |||||||||| || ||| | ||| | |
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| T |
32126944 |
taaaagcagaagctagttgagatggaagagcgattttggttcttccaagaccagccatgccagaagcaccacctgcaagtcctcgtaataatgatgttgg |
32127043 |
T |
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| Q |
210 |
tgcacatgagaataggaagcgtgaaac |
236 |
Q |
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| T |
32127044 |
tgcgcatgaaaatagaaagcgtgaaac |
32127070 |
T |
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