View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5681_low_2 (Length: 722)

Name: NF5681_low_2
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5681_low_2
NF5681_low_2
[»] scaffold0178 (2 HSPs)
scaffold0178 (18-518)||(18486-18989)
scaffold0178 (343-472)||(19094-19226)
[»] chr2 (4 HSPs)
chr2 (353-518)||(41282855-41283019)
chr2 (344-507)||(41282649-41282812)
chr2 (343-472)||(1233749-1233879)
chr2 (457-518)||(33361052-33361111)
[»] chr4 (2 HSPs)
chr4 (606-711)||(52535428-52535533)
chr4 (450-518)||(5469961-5470027)
[»] chr5 (1 HSPs)
chr5 (376-519)||(120077-120218)
[»] chr3 (4 HSPs)
chr3 (606-694)||(49349811-49349899)
chr3 (455-519)||(8922888-8922950)
chr3 (455-519)||(41325826-41325888)
chr3 (455-519)||(50107572-50107634)
[»] chr8 (1 HSPs)
chr8 (455-518)||(38443039-38443100)
[»] chr7 (1 HSPs)
chr7 (455-499)||(48204975-48205017)


Alignment Details
Target: scaffold0178 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 518
Target Start/End: Complemental strand, 18989 - 18486
Alignment:
Q  18 cctcccatcctttacaaccacacaaattggggtcacccattacaaccacatcaaagcttcaacaacataatccattatccattgtgatacatatcttttt 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |       | |||||||||||||||    
T  18989 cctcccatcctttacaaccacacaaattggg-tcacccattacaaccacatcaaagcttcaacaacataatccact-------gcgatacatatcttttt 18898  T
Q  118 aacataaatgggagtaatgttgttagtcttgcaaactgataaaaatagagagtatgca----------------aaactgggtcacccattcccccacat 201  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||    
T  18897 aacataaatgggagtagtgttgttagtcttgcaaactgataaaaatagagagtatgcataaagagttagttgcaaaactgggtcacccattcccccacat 18798  T
Q  202 cgaaaccactataataacagaaccattgaaatgattttttacaaccacacaaattgggtcatccatggaaattattttcnnnnnnnaccaaatatgacat 301  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  18797 cgaaaccactacaatagcagaaccattgaaatgattttttacaaccacacaaattgggtcatccatggaaattattttctttttttaccaaatatgacat 18698  T
Q  302 aatctttaaaaagttcaaattgcagatttcttatttttgcaggtgatgatgagaagaagaagaaaggaggcagcgtgttgtttcagatacaagagagtaa 401  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||| |||||||||||||    
T  18697 aatcgttaaaaagttcaaattgcagatttcttatttttgcaggtgatgatg---agaagaagaaaggaggcggcgtgttgtttcagctacaagagagtaa 18601  T
Q  402 caagtttgttttttctaaggttttaattccaaccctttgtttaatttattccgcatgtcacacatccatgagatggtaaatggtgtaaattgagcaaatt 501  Q
    |||||||||||||||||||||||||||  || |||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||| |||| |    
T  18600 caagtttgttttttctaaggttttaatctcagccctttgtttaatttattccacatgtcacacatccat--gatggtaaatggtgtaaattgaacaaact 18503  T
Q  502 taaatggagtaaagatg 518  Q
    |||||||||||||||||    
T  18502 taaatggagtaaagatg 18486  T

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Target: scaffold0178; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 343 - 472
Target Start/End: Original strand, 19094 - 19226
Alignment:
Q  343 ggtgatgatgagaagaagaagaaaggaggca-gcgtgttgtttcagatacaagagagtaacaagtttgtttt--ttctaaggttttaattccaacccttt 439  Q
    ||||| |||||||||||||||| |||||||| | || |||||| |||||||||||||||| ||| |||||||  ||||||| |||||||  || ||||||    
T  19094 ggtgacgatgagaagaagaagacaggaggcaagtgtcttgttttagatacaagagagtaataagattgttttttttctaagtttttaatctcagcccttt 19193  T
Q  440 gtttaatttattccgcatgtcacacatccatga 472  Q
    |||||||||||| | ||||||||||||||||||    
T  19194 gtttaatttattacacatgtcacacatccatga 19226  T

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Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 353 - 518
Target Start/End: Original strand, 41282855 - 41283019
Alignment:
Q  353 agaagaagaagaaaggaggcag-cgtgttgtttcagatacaagagagtaacaagtttgttttttctaaggttttaattccaaccctttgtttaatttatt 451  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  41282855 agaagaagaagaaaggtggcaggcgtgttgtttcagatacaagagagtaacaagtttgttttttctaaggttttaatctcaaccctttgtttaatttatt 41282954  T
Q  452 ccgcatgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatg 518  Q
    || ||||||||||||||||  ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  41282955 ccacatgtcacacatccat--gatggtaaatgatgtaaattgagcaaacttaaatggagtaaagatg 41283019  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 344 - 507
Target Start/End: Complemental strand, 41282812 - 41282649
Alignment:
Q  344 gtgatgatgagaagaagaagaaaggaggcagc-gtgttgtttcagatacaagagagtaacaagtttg-ttttttctaaggttttaattccaaccctttgt 441  Q
    |||||||  |||||||||||| ||||||||   |||||||||||||||||||| ||||| ||| ||| ||||||||| | |||||||  ||| |||||||    
T  41282812 gtgatgagaagaagaagaagacaggaggcaaatgtgttgtttcagatacaagaaagtaataagattgtttttttctatgtttttaatctcaatcctttgt 41282713  T
Q  442 ttaatttattccgcatgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatg 507  Q
    | |||||||||| ||| ||||||||| ||  ||||||||||||||||||| ||||||| |||||||    
T  41282712 tcaatttattccacatatcacacatctat--gatggtaaatggtgtaaatggagcaaacttaaatg 41282649  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 343 - 472
Target Start/End: Complemental strand, 1233879 - 1233749
Alignment:
Q  343 ggtgatgatgagaagaagaagaaaggaggcagc-gtgttgtttcagatacaagagagtaacaagtttgttttttctaaggttttaattccaaccctttgt 441  Q
    ||||| || ||||||||||||||||||| | |  |||||| ||| |||||||||||  ||| |||||||||||||||||||||||||   |||| ||| |    
T  1233879 ggtgacgaagagaagaagaagaaaggagactggtgtgttgcttcggatacaagagaagaactagtttgttttttctaaggttttaatcttaaccatttat 1233780  T
Q  442 ttaatttattccgcatgtcacacatccatga 472  Q
    || |||| | || | ||||||||||||||||    
T  1233779 tttatttttgccacgtgtcacacatccatga 1233749  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 457 - 518
Target Start/End: Complemental strand, 33361111 - 33361052
Alignment:
Q  457 tgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatg 518  Q
    ||||||||||||||||   |||||||||| |||||||||||||  ||||||||| |||||||    
T  33361111 tgtcacacatccatgaa--ggtaaatggtataaattgagcaaaggtaaatggagcaaagatg 33361052  T

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Target: chr4 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 606 - 711
Target Start/End: Complemental strand, 52535533 - 52535428
Alignment:
Q  606 tccctatctccctccaatatttgtagccgcttcatcctccgtgtccgaaacatcttctccaacgattcatagttgcactcttttactttctgattactgc 705  Q
    |||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52535533 tccctatctctctccaatatgtgtagccgcttcatcctccgtgcccgaaacatcttctccaacgattcatagttgcactcttttactttctgattactgc 52535434  T
Q  706 tccttt 711  Q
    | ||||    
T  52535433 ttcttt 52535428  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 450 - 518
Target Start/End: Original strand, 5469961 - 5470027
Alignment:
Q  450 ttccgcatgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatg 518  Q
    |||| |||||||||||||||| |  ||||||||||  ||||||||||||| |||||||||| |||||||    
T  5469961 ttccacatgtcacacatccataa--tggtaaatgggataaattgagcaaacttaaatggagcaaagatg 5470027  T

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Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 376 - 519
Target Start/End: Complemental strand, 120218 - 120077
Alignment:
Q  376 gtgttgtttcagatacaagagagtaacaagtttgttttttctaaggttttaattccaaccctttgtttaatttattccgcatgtcacacatccatgagat 475  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||| ||| ||| |||| ||||  ||||||| |||| || |  |    
T  120218 gtgttgtttcagatacaagagaggaacaagtttgttttttctaaagttttaatctcaaccatttattttattttttccatatgtcacgcatctataactt 120119  T
Q  476 ggtaaatggtgtaaattgagcaaatttaaatggagtaaagatga 519  Q
    |  |||||| |||||||||| |||  ||||||||| ||||||||    
T  120118 g--aaatggggtaaattgaggaaagctaaatggagcaaagatga 120077  T

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Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 606 - 694
Target Start/End: Original strand, 49349811 - 49349899
Alignment:
Q  606 tccctatctccctccaatatttgtagccgcttcatcctccgtgtccgaaacatcttctccaacgattcatagttgcactcttttacttt 694  Q
    ||||||||||  ||| |||  |||| ||||||||||||||| | ||||| |||||||||||||||||||||||| ||| ||||||||||    
T  49349811 tccctatctctttcccatacgtgtaaccgcttcatcctccgagcccgaaccatcttctccaacgattcatagttccacgcttttacttt 49349899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 455 - 519
Target Start/End: Complemental strand, 8922950 - 8922888
Alignment:
Q  455 catgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatga 519  Q
    ||||||||||||||||||  || ||||||| ||||||||||||||  ||||||||||||||||||    
T  8922950 catgtcacacatccatga--tgataaatggggtaaattgagcaaacctaaatggagtaaagatga 8922888  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 455 - 519
Target Start/End: Complemental strand, 41325888 - 41325826
Alignment:
Q  455 catgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatga 519  Q
    ||||||||||||||||||  || ||||||| ||||||||||||||  ||||||||||||||||||    
T  41325888 catgtcacacatccatga--tgataaatggggtaaattgagcaaacctaaatggagtaaagatga 41325826  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 455 - 519
Target Start/End: Complemental strand, 50107634 - 50107572
Alignment:
Q  455 catgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatga 519  Q
    ||||||||||||||||||  || ||||||| ||||||||||||||  |||||| |||||||||||    
T  50107634 catgtcacacatccatga--tgataaatggggtaaattgagcaaacctaaatgtagtaaagatga 50107572  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 455 - 518
Target Start/End: Complemental strand, 38443100 - 38443039
Alignment:
Q  455 catgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatg 518  Q
    ||||||||||||||||||  |||||||||| |||||| ||||| | |||||||||| |||||||    
T  38443100 catgtcacacatccatga--tggtaaatggggtaaatggagcagacttaaatggagcaaagatg 38443039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 455 - 499
Target Start/End: Original strand, 48204975 - 48205017
Alignment:
Q  455 catgtcacacatccatgagatggtaaatggtgtaaattgagcaaa 499  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||    
T  48204975 catgtcacacatccatga--tggtaaatggtgtaaatggagcaaa 48205017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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