View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5681_low_3 (Length: 597)
Name: NF5681_low_3
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5681_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 278 - 585
Target Start/End: Complemental strand, 26316319 - 26316011
Alignment:
| Q |
278 |
tgtttggggacacttcaagcgggtattaaagagttctaatcaattataaattatcattttgatagagaaaaatatataaggtggtatctttacactcacc |
377 |
Q |
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| T |
26316319 |
tgtttggggacacttcaagcgggtattaaagagttctaatcaattataaattatcattttgatagagaaaaatatataaggtggtatctttacactcacc |
26316220 |
T |
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| Q |
378 |
ttttttaaggaaattatactcagtcttttcttttggtgaaacaaaatggctatgccccaac-nnnnnnnnnnnnnncctctaggaaaaaccttatattac |
476 |
Q |
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| T |
26316219 |
ttttttaaggaaattatactcagtcttttcttttggtgaaacaaaagggctatgccccaacaaaaaaaactaaaaacctctaggaaaaaccttatattac |
26316120 |
T |
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| Q |
477 |
aacatcatatgttaataatacattcgaaataaaagcaggagaaaatttaaaatcttgagactagaatctagactacaatcatgtttggctagacccgcaa |
576 |
Q |
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| T |
26316119 |
aacatcatatgttaataatacattcgaaataaaagcaggagaaaatttaaaatcttgagactagaatctagactacaatcatgtttggctagacccgcaa |
26316020 |
T |
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| Q |
577 |
cctgatatt |
585 |
Q |
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| T |
26316019 |
cctgatatt |
26316011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 26316541 - 26316305
Alignment:
| Q |
20 |
gacttatcttatttgagatattaagtgagatcgcttagtgtagtgtaaggatatacgaaaaaggtttcgaatgaaatatattgttatcgttctttgaata |
119 |
Q |
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| T |
26316541 |
gacttaacttatttgaaatattaagtgagatcgcttagtgta-----aggatatacgaaaaaggtttcgaatgaaatatattgttatcgttctttgaata |
26316447 |
T |
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| Q |
120 |
gacaacacaaaaattat---aaagtggctgaaggatcaattatgtaggtttaagtgctaactaagggcctatgtattaaagttggtcattattttaactc |
216 |
Q |
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| T |
26316446 |
gacaacacaaaaattattataaagtggctgaaggatcaattatgtaggtttaagtgctaactaagggcctatgtattaaagttggtcattattttaactc |
26316347 |
T |
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| Q |
217 |
tgaatttttcaaatgtggtctgtgtcatgtttggggacactt |
258 |
Q |
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| T |
26316346 |
tgaatttttcaaatgtggtgtgtgtcatgtttggggacactt |
26316305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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