View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5681_low_4 (Length: 493)

Name: NF5681_low_4
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5681_low_4
NF5681_low_4
[»] chr2 (22 HSPs)
chr2 (214-493)||(24145323-24145601)
chr2 (28-212)||(14942035-14942219)
chr2 (28-210)||(42769749-42769931)
chr2 (28-210)||(29846396-29846579)
chr2 (28-210)||(40277279-40277461)
chr2 (29-212)||(14186430-14186613)
chr2 (34-212)||(19181501-19181679)
chr2 (26-168)||(6318446-6318592)
chr2 (73-168)||(3597903-3597998)
chr2 (68-168)||(1387319-1387420)
chr2 (37-168)||(14539704-14539837)
chr2 (39-168)||(33009667-33009799)
chr2 (47-168)||(41674716-41674840)
chr2 (30-144)||(43139766-43139882)
chr2 (28-168)||(3956567-3956709)
chr2 (42-168)||(40780050-40780179)
chr2 (37-168)||(28321703-28321836)
chr2 (73-168)||(23685406-23685503)
chr2 (42-147)||(2888058-2888164)
chr2 (28-64)||(3597881-3597917)
chr2 (89-168)||(32486239-32486320)
chr2 (73-144)||(25665244-25665316)
[»] chr8 (18 HSPs)
chr8 (28-212)||(22324549-22324733)
chr8 (28-168)||(35806791-35806931)
chr8 (28-168)||(21525355-21525495)
chr8 (33-212)||(42013825-42014004)
chr8 (28-168)||(26021392-26021533)
chr8 (28-168)||(33934360-33934500)
chr8 (28-210)||(42072383-42072565)
chr8 (27-147)||(24065291-24065411)
chr8 (31-168)||(19334779-19334917)
chr8 (28-113)||(16523158-16523243)
chr8 (37-165)||(16818973-16819105)
chr8 (39-111)||(16591377-16591449)
chr8 (38-147)||(43282852-43282962)
chr8 (50-147)||(21488084-21488181)
chr8 (79-147)||(34697431-34697500)
chr8 (42-168)||(10112042-10112170)
chr8 (42-168)||(2271197-2271318)
chr8 (120-215)||(16523018-16523114)
[»] chr7 (17 HSPs)
chr7 (28-212)||(34707069-34707253)
chr7 (28-168)||(44164734-44164874)
chr7 (28-168)||(10576670-10576810)
chr7 (30-213)||(32876523-32876706)
chr7 (28-168)||(24320430-24320570)
chr7 (28-157)||(34259526-34259655)
chr7 (30-212)||(29555932-29556114)
chr7 (28-168)||(29238134-29238274)
chr7 (28-150)||(29981104-29981226)
chr7 (28-168)||(33057648-33057789)
chr7 (37-168)||(19334560-19334693)
chr7 (28-168)||(17303105-17303248)
chr7 (28-168)||(10334173-10334315)
chr7 (42-142)||(9770682-9770782)
chr7 (42-168)||(26284383-26284510)
chr7 (42-121)||(15017817-15017896)
chr7 (73-168)||(41853128-41853226)
[»] chr6 (16 HSPs)
chr6 (28-212)||(9231845-9232029)
chr6 (28-212)||(24694642-24694826)
chr6 (33-168)||(14309794-14309929)
chr6 (28-168)||(13627537-13627677)
chr6 (27-139)||(1727923-1728035)
chr6 (28-168)||(28750641-28750783)
chr6 (37-168)||(27863695-27863828)
chr6 (38-163)||(13103119-13103246)
chr6 (42-147)||(34103703-34103808)
chr6 (71-147)||(11212689-11212765)
chr6 (116-212)||(11084563-11084659)
chr6 (71-168)||(11279536-11279634)
chr6 (27-109)||(24497564-24497646)
chr6 (31-91)||(11084664-11084724)
chr6 (73-113)||(8412717-8412757)
chr6 (104-165)||(24500767-24500830)
[»] chr4 (27 HSPs)
chr4 (28-210)||(1535726-1535908)
chr4 (28-212)||(25954703-25954887)
chr4 (28-212)||(34240946-34241130)
chr4 (28-212)||(37801255-37801439)
chr4 (28-212)||(49284310-49284494)
chr4 (50-212)||(52632471-52632633)
chr4 (28-168)||(36012176-36012316)
chr4 (28-212)||(35018889-35019072)
chr4 (50-165)||(46583554-46583669)
chr4 (31-142)||(16338207-16338318)
chr4 (28-168)||(17888541-17888683)
chr4 (102-212)||(16338309-16338419)
chr4 (28-168)||(31377385-31377526)
chr4 (37-147)||(20818584-20818695)
chr4 (38-168)||(54090176-54090307)
chr4 (29-168)||(46473989-46474130)
chr4 (31-138)||(10094387-10094495)
chr4 (40-168)||(11054448-11054581)
chr4 (72-168)||(322584-322682)
chr4 (37-168)||(12792231-12792364)
chr4 (28-121)||(47084056-47084149)
chr4 (42-163)||(9742538-9742661)
chr4 (28-96)||(36851378-36851446)
chr4 (42-168)||(50328791-50328919)
chr4 (37-168)||(35322704-35322837)
chr4 (28-147)||(19124729-19124849)
chr4 (73-121)||(5780790-5780838)
[»] chr3 (29 HSPs)
chr3 (28-168)||(21853194-21853334)
chr3 (28-213)||(13856051-13856236)
chr3 (28-212)||(44994959-44995144)
chr3 (31-210)||(40845911-40846090)
chr3 (28-168)||(8950495-8950635)
chr3 (28-168)||(32352844-32352984)
chr3 (28-212)||(5391411-5391594)
chr3 (50-168)||(23467507-23467625)
chr3 (28-168)||(3178699-3178840)
chr3 (27-168)||(1781757-1781900)
chr3 (28-168)||(10839371-10839513)
chr3 (28-168)||(43347327-43347468)
chr3 (28-168)||(20382514-20382655)
chr3 (28-168)||(19649363-19649506)
chr3 (28-168)||(36539627-36539769)
chr3 (42-164)||(54546904-54547027)
chr3 (37-159)||(22845362-22845484)
chr3 (42-167)||(8926762-8926889)
chr3 (42-168)||(33103739-33103866)
chr3 (32-145)||(46685779-46685891)
chr3 (68-158)||(47889731-47889823)
chr3 (30-168)||(6280352-6280491)
chr3 (35-143)||(51336231-51336339)
chr3 (76-168)||(48206849-48206943)
chr3 (40-168)||(36825965-36826087)
chr3 (38-102)||(27642723-27642787)
chr3 (37-164)||(19644327-19644458)
chr3 (73-168)||(791812-791906)
chr3 (37-140)||(39352219-39352321)
[»] chr5 (27 HSPs)
chr5 (28-168)||(38397595-38397735)
chr5 (31-212)||(23218438-23218619)
chr5 (28-212)||(37169024-37169208)
chr5 (28-168)||(6257401-6257541)
chr5 (28-168)||(16618561-16618701)
chr5 (29-168)||(39862479-39862618)
chr5 (28-165)||(15631613-15631751)
chr5 (28-168)||(8456954-8457096)
chr5 (42-168)||(10081140-10081268)
chr5 (30-168)||(36769067-36769206)
chr5 (42-165)||(614397-614522)
chr5 (28-168)||(11856290-11856432)
chr5 (37-147)||(9737981-9738094)
chr5 (40-168)||(25560330-25560460)
chr5 (40-168)||(42119617-42119747)
chr5 (39-168)||(27916134-27916266)
chr5 (37-145)||(29491414-29491521)
chr5 (30-144)||(33271263-33271377)
chr5 (37-147)||(6174762-6174874)
chr5 (27-147)||(3341110-3341230)
chr5 (28-139)||(10115185-10115297)
chr5 (37-147)||(29790219-29790328)
chr5 (28-142)||(10052491-10052606)
chr5 (73-121)||(19322058-19322106)
chr5 (98-146)||(33188403-33188451)
chr5 (95-168)||(22903252-22903329)
chr5 (51-147)||(15475408-15475505)
[»] chr1 (26 HSPs)
chr1 (28-168)||(49902465-49902605)
chr1 (28-212)||(42517285-42517473)
chr1 (33-211)||(3346740-3346918)
chr1 (28-168)||(48392397-48392537)
chr1 (28-212)||(7742770-7742954)
chr1 (28-165)||(5974988-5975125)
chr1 (28-212)||(10156007-10156191)
chr1 (28-168)||(47022699-47022839)
chr1 (50-212)||(23908238-23908400)
chr1 (50-212)||(29149561-29149723)
chr1 (28-165)||(38859849-38859988)
chr1 (28-168)||(10907639-10907781)
chr1 (27-147)||(30745361-30745482)
chr1 (27-147)||(30766812-30766933)
chr1 (42-140)||(5558334-5558431)
chr1 (37-168)||(42456566-42456700)
chr1 (42-168)||(26835333-26835461)
chr1 (30-108)||(37189697-37189774)
chr1 (28-143)||(26511625-26511739)
chr1 (79-147)||(30252787-30252856)
chr1 (44-147)||(13131914-13132017)
chr1 (43-168)||(14796871-14796998)
chr1 (43-168)||(14805745-14805872)
chr1 (28-168)||(44107382-44107521)
chr1 (71-147)||(45968685-45968761)
chr1 (104-146)||(8430508-8430551)
[»] scaffold0079 (2 HSPs)
scaffold0079 (31-142)||(54542-54653)
scaffold0079 (102-212)||(54441-54551)
[»] scaffold0045 (1 HSPs)
scaffold0045 (42-147)||(34457-34563)
[»] scaffold0086 (1 HSPs)
scaffold0086 (42-121)||(20836-20915)
[»] scaffold0016 (1 HSPs)
scaffold0016 (73-118)||(85547-85592)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 214 - 493
Target Start/End: Original strand, 24145323 - 24145601
Alignment:
Q  214 atcataatcataataattgtgatgtttttaatatgtgggtcacattttatccctaaatttttcaaatcctatgttttccctccaacttcactttgtttta 313  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24145323 atcataatcataataattgtgatgtttttaatatgttggtcacattttatccctaaatttttcaaatcctatgttttccctccaacttcactttgtttta 24145422  T
Q  314 aaatcttaaatttgattttatggttctggggtctgaaaaatctttgaaataatttctcaaaccttcaaatcgatctgtttttcccaaatggcaatggtaa 413  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24145423 aaatcttaaatttgattttgtggttccggggtctgaaaaatctttgaaataatttctcaaaccttcaaatcgatctgtttttcccaaatggcaatggtaa 24145522  T
Q  414 ctgttcccgagttttctgaaatttctgcaatttccagtgnnnnnnngtttttggaatatcaaaggtaaggttattagact 493  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  24145523 ctgttcccgagttttctgaaatttctgcaatttccagtg-aaaaaagtttttggaatatcaaaggtaaggttattagact 24145601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 14942035 - 14942219
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14942035 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 14942134  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||||||| ||||||||||||||||          || |||||||||||||||| ||||||||||||||    
T  14942135 tgcttgcaatttcttatgtacgccttataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgccact 14942219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 42769749 - 42769931
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42769749 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 42769848  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgcca 210  Q
    |||||||||||||||||||| ||||||||||||||||||||          || |||||||||||||||| ||||||||||||    
T  42769849 tgcttgcaatttcttatgtatgccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgcca 42769931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 29846579 - 29846396
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  29846579 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatt 29846480  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa-nnnnnnnnnngctcgggctttacaatatttctggctccgcca 210  Q
    |||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||| ||||||||||||    
T  29846479 tgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttcgctcgggctttacaatattcctggctccgcca 29846396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 40277279 - 40277461
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||| || |||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40277279 ggctccgggccaaattttttgcaattttttatgtaaatccctataaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 40277378  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgcca 210  Q
    |||||||||||||||||||||||||||||||||||||||||          || |||||||||||||||| ||||||||||||    
T  40277379 tgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgcca 40277461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 14186430 - 14186613
Alignment:
Q  29 gctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattattt 128  Q
    |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  14186430 gctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacactttttattattt 14186529  T
Q  129 gcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    ||||||||||||||||||||||||||||||||||||||||          || || ||||||||||||| ||||||||||||||    
T  14186530 gcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgagctttacaatattcctggctccgccact 14186613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 19181679 - 19181501
Alignment:
Q  34 gggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttg 133  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19181679 gggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttg 19181580  T
Q  134 caatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||| ||||||||||||||||||||          |  |||||||||||||||| ||||||||||||||    
T  19181579 caatttcttatgtatgccctataaatgtgttgcaaatttttttttgtccgggctttacaatattcctggctccgccact 19181501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 26 - 168
Target Start/End: Original strand, 6318446 - 6318592
Alignment:
Q  26 taggctccgggccaaattttttg-caatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca--tttttta 122  Q
    |||||||||| |||| ||||||  ||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |  |||||||    
T  6318446 taggctccggcccaatttttttttcaatttcttatgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagatttttttta 6318545  T
Q  123 ttatttgcttgcaatttcttatgtacg-ccctataaatgtgttgcaa 168  Q
    ||||||||||||||||||  ||||| | |||||||||||||||||||    
T  6318546 ttatttgcttgcaatttcaaatgtaagcccctataaatgtgttgcaa 6318592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 3597903 - 3597998
Alignment:
Q  73 aatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||||| | |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  3597903 aatttcttgtgtaaatccctataaattggacaatttctttacattttttattatttacttgcaatttcttacgtacgccctataaatgtattgcaa 3597998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 68 - 168
Target Start/End: Original strand, 1387319 - 1387420
Alignment:
Q  68 ctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacgccc-tataaatgtgttgc 166  Q
    |||||||||||||| ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||  ||| || |||||||||||    
T  1387319 ctatgaatttcttagataaacccctataaattgggtaatttctttagattttttattatttgcttgcaatttcttatgtaaacccttacaaatgtgttgc 1387418  T
Q  167 aa 168  Q
    ||    
T  1387419 aa 1387420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 14539704 - 14539837
Alignment:
Q  37 ccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca-ttttttattatttgcttgca 135  Q
    ||||||||||||||||||||| |||||    || |||||||||||||||||| |||||||||| ||||||||||||| | ||||||||||||| ||||||    
T  14539704 ccaaattttttgcaatttcttatgtaatttcctctgaatttcttatataaattcctataaattaggcaatttctttagatttttttattattttcttgca 14539803  T
Q  136 atttcttatgtacgc-cctataaatgtgttgcaa 168  Q
    ||||||||| ||  | ||||||||||||||||||    
T  14539804 atttcttatataaacacctataaatgtgttgcaa 14539837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 33009799 - 33009667
Alignment:
Q  39 aaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttt--ttattatttgcttgcaa 136  Q
    ||||||||| ||||||||| | |||| | |||||||||| |||||||||||| |||||||||| ||||||||||| |||||  |||||||||||||||||    
T  33009799 aaattttttacaatttcttatataaatccctatgaatttgttatataaatccttataaattggacaatttctttagatttttattattatttgcttgcaa 33009700  T
Q  137 tttcttatgtacgccc-tataaatgtgttgcaa 168  Q
    ||| |||||||  ||| |||||| |||||||||    
T  33009699 ttttttatgtaaacccatataaacgtgttgcaa 33009667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 47 - 168
Target Start/End: Original strand, 41674716 - 41674840
Alignment:
Q  47 tgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt--attatttgcttgcaatttcttat 144  Q
    ||||||||||| |||||| |||| ||||||| ||||||||| || |||||||||| ||||||||||| |||||||  | |||||||||||||||||||||    
T  41674716 tgcaatttcttatgtaaatctctctgaattttttatataaacccttataaattggacaatttctttagatttttttaactatttgcttgcaatttcttat 41674815  T
Q  145 gt-acgccctataaatgtgttgcaa 168  Q
     | |  |||||||||||||||||||    
T  41674816 ataaatccctataaatgtgttgcaa 41674840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 43139882 - 43139766
Alignment:
Q  30 ctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca--ttttttattatt 127  Q
    |||||| |||| |||||||||||||||| |||||    || | ||||||||||||||| |||||||||||| |||||||||||| |  ||||||||||||    
T  43139882 ctccggtccaatttttttgcaatttcttatgtaagttcctcttaatttcttatataaacccctataaattgagcaatttctttagattttttttattatt 43139783  T
Q  128 tgcttgcaatttcttat 144  Q
    |||||||||||||||||    
T  43139782 tgcttgcaatttcttat 43139766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 3956709 - 3956567
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttcttt-acattttttattat 126  Q
    |||||||| |||||   ||| |||||| || |||||| | |||||||||| ||||||||| |||| |||||||| |||||||||| | ||||||||||||    
T  3956709 ggctccggcccaaaaaattttcaattttttatgtaaatccctatgaatttattatataaacccctgtaaattggacaatttctttaaaattttttattat 3956610  T
Q  127 ttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 168  Q
    ||||||||||||||  |||||  || |||||||||||||||||    
T  3956609 ttgcttgcaatttcaaatgtaaacctctataaatgtgttgcaa 3956567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 40780179 - 40780050
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaat-ccctataaattgggcaatttctttacatttttta-ttatttgcttgcaattt 139  Q
    ||||||| |||||||| ||||||   || |||||||||||||||||  ||||||||||| | |||||| |||| |||||||| |||||||||||||||||    
T  40780179 ttttttgtaatttcttatgtaaattcctctgaatttcttatataaacaccctataaatttgacaatttttttaaattttttaattatttgcttgcaattt 40780080  T
Q  140 cttatgtacgcc-ctataaatgtgttgcaa 168  Q
    ||||||||  || |||||||| ||||||||    
T  40780079 cttatgtaaaccgctataaatatgttgcaa 40780050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 28321703 - 28321836
Alignment:
Q  37 ccaaattttttgcaatttcttgtgtaaacctcta-tgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgc 134  Q
    |||| |||||||||||||||| ||||||  |||  ||||| ||||||||||| || |||||||||||||||||| ||  ||||||| ||||||||||| |    
T  28321703 ccaatttttttgcaatttcttatgtaaat-tctcctgaatatcttatataaacccttataaattgggcaatttcattgaattttttgattatttgcttcc 28321801  T
Q  135 aatttcttatgt-acgccctataaatgtgttgcaa 168  Q
    |||||||||| | |  |||||||||||||||||||    
T  28321802 aatttcttatataaacccctataaatgtgttgcaa 28321836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 23685406 - 23685503
Alignment:
Q  73 aatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgccc-tataaatgtgttgcaa 168  Q
    |||||||||||||||||| |||||||| | |||||| |||| || |||| ||||||||||||||||||||||||||  ||| ||||||| ||||||||    
T  23685406 aatttcttatataaatccttataaatttgacaatttatttatatattttgattatttgcttgcaatttcttatgtaaacccttataaatatgttgcaa 23685503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 2888164 - 2888058
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca-ttttttattatttgcttgcaatttc 140  Q
    ||||||| |||||||| |||||| |||||||||||| |||||||||  |||||||||||  |||||| |||| | |||||||||| ||||| ||||  ||    
T  2888164 ttttttgtaatttcttatgtaaatctctatgaattttttatataaactcctataaattgaacaatttttttagatttttttattaattgctagcaaagtc 2888065  T
Q  141 ttatgta 147  Q
    |||||||    
T  2888064 ttatgta 2888058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 3597881 - 3597917
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaa 64  Q
    |||||||||||||||||||||||||||||||||||||    
T  3597881 ggctccgggccaaattttttgcaatttcttgtgtaaa 3597917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 32486320 - 32486239
Alignment:
Q  89 ccctataaattgggcaatttctttacatttttta-ttatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 168  Q
    |||||||||||||| ||||| || | |||||||| |||||||||||||||||||||| ||  | | ||||||||||||||||    
T  32486320 ccctataaattgggtaattttttaagattttttaattatttgcttgcaatttcttatataaacacttataaatgtgttgcaa 32486239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 25665316 - 25665244
Alignment:
Q  73 aatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttat 144  Q
    |||||||||||||||    ||||||||||| ||||||||||  |||||| |||||||||||||||||| ||||    
T  25665316 aatttcttatataaacatttataaattgggtaatttctttaagttttttgattatttgcttgcaattttttat 25665244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 9e-68; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 22324733 - 22324549
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22324733 ggctccgggccaaattttttgtaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 22324634  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||||||||||||||||||||||||          || |||||||||||||||| ||||||||||||||    
T  22324633 tgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttgcccgggctttacaatattcctggctccgccact 22324549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 35806931 - 35806791
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35806931 ggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 35806832  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  35806831 tgcttgcaatttcttatgtacaccctataaatgtgttgcaa 35806791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 21525495 - 21525355
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  21525495 ggctccgggtcaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatt 21525396  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21525395 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 21525355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 42014004 - 42013825
Alignment:
Q  33 cgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgctt 132  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||    
T  42014004 cgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaatttctttatattttttattatttgctt 42013905  T
Q  133 gcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    ||||||||||||||||||||||||||||||||| ||          || |||||||||||||||||| ||||||||||||    
T  42013904 gcaatttcttatgtacgccctataaatgtgttgaaattttttttttgcccgggctttacaatatttcaggctccgccact 42013825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 26021533 - 26021392
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatt-ttttattat 126  Q
    ||||||| |||||||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||    
T  26021533 ggctccgtgccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaacccctataaattgggtaatttctttacatttttttattat 26021434  T
Q  127 ttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26021433 ttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 26021392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 33934360 - 33934500
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    |||||| ||||||||||||||||||||||| ||||||   |||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||    
T  33934360 ggctccaggccaaattttttgcaatttcttttgtaaattcctatgaatttcttatataaacccctataaattgggcaatttttttatattttttattatt 33934459  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33934460 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 33934500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 42072565 - 42072383
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  42072565 ggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatt 42072466  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgcca 210  Q
    ||||||||||||||||||||  |  ||||||||||||||||          || |||||||||||||||| ||||||||||||    
T  42072465 tgcttgcaatttcttatgtaaacaatataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgcca 42072383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 27 - 147
Target Start/End: Complemental strand, 24065411 - 24065291
Alignment:
Q  27 aggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattat 126  Q
    |||||| ||||||||  |||||||||||||  | |||| ||||||||||||||||||||||  ||||||||||||||||||||||||  |||||||||||    
T  24065411 aggctctgggccaaaacttttgcaatttctcatataaatctctatgaatttcttatataaactcctataaattgggcaatttctttagcttttttattat 24065312  T
Q  127 ttgcttgcaatttcttatgta 147  Q
    |||||||||||||||||||||    
T  24065311 ttgcttgcaatttcttatgta 24065291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 19334917 - 19334779
Alignment:
Q  31 tccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatt-ttttattatttg 129  Q
    ||||| ||||||||||||||||||||| | ||||    ||||||||| ||||||||| | ||||||||| | ||||||||||| ||| ||||||||||||    
T  19334917 tccggcccaaattttttgcaatttcttatataaattcttatgaattttttatataaacctctataaattagacaatttctttaaattgttttattatttg 19334818  T
Q  130 cttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    ||| ||||||||||||||  |||||||||| ||||||||    
T  19334817 cttacaatttcttatgtaacccctataaatatgttgcaa 19334779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 16523243 - 16523158
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttcttta 113  Q
    |||||||| ||||||||||| ||||||| | |||||| | |||||||||||||||||||||||||||||||||||||| |||||||    
T  16523243 ggctccggcccaaattttttacaatttcatatgtaaatccctatgaatttcttatataaatccctataaattgggcaacttcttta 16523158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 16818973 - 16819105
Alignment:
Q  37 ccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttcttta---cattttttattatttgcttg 133  Q
    ||||||||||||||||||||| |||||| |||  ||||||||||||||||| |||||||||||||| ||||||| ||     | ||||||||||||||||    
T  16818973 ccaaattttttgcaatttcttttgtaaatctccttgaatttcttatataaacccctataaattgggtaatttctctatctagtattttattatttgcttg 16819072  T
Q  134 caatttcttatgt-acgccctataaatgtgttg 165  Q
    |||||| |||| | |  ||||||||||||||||    
T  16819073 caattttttatataaacccctataaatgtgttg 16819105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 16591377 - 16591449
Alignment:
Q  39 aaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctt 111  Q
    ||||||||||||||||||| ||||||  |||| |||||||||||||||||| |||||||||||||||||||||    
T  16591377 aaattttttgcaatttcttatgtaaatttctaagaatttcttatataaatcactataaattgggcaatttctt 16591449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 43282852 - 43282962
Alignment:
Q  38 caaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttcttta-cattttttattatttgcttgcaa 136  Q
    |||||||||| ||||||||| ||||||    | ||||||| |||||||||||||||||||||||| |||||| |||  | |||||||||||||||||| |    
T  43282852 caaattttttacaatttcttatgtaaattcttctgaatttattatataaatccctataaattgggtaatttcattagaaatttttattatttgcttgcta 43282951  T
Q  137 tttcttatgta 147  Q
    |||||||||||    
T  43282952 tttcttatgta 43282962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 21488181 - 21488084
Alignment:
Q  50 aatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 147  Q
    |||||||||||||||   || ||||||||||||| ||| ||| ||||||||| ||||||||||| ||||||| |||||| |||||||||||||||||||    
T  21488181 aatttcttgtgtaaattcctttgaatttcttatagaaaccccgataaattggacaatttctttagatttttttattatt-gcttgcaatttcttatgta 21488084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 34697431 - 34697500
Alignment:
Q  79 ttatataaatccctataaattgggcaatttctttacatttt-ttattatttgcttgcaatttcttatgta 147  Q
    ||||||||||| |||||||||| | ||||||||||  |||| ||||||||||||||||||||||||||||    
T  34697431 ttatataaatctctataaattgagaaatttctttaattttttttattatttgcttgcaatttcttatgta 34697500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 10112170 - 10112042
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttc 140  Q
    ||||||||||||| || ||||||   || | |||||||||||||||  | |||||||||| ||||||||||  ||||||| |||||||  ||||||||||    
T  10112170 ttttttgcaattttttatgtaaattcctcttaatttcttatataaactcttataaattggacaatttcttttaattttttgattatttatttgcaatttc 10112071  T
Q  141 ttatgt-acgccctataaatgtgttgcaa 168  Q
    |||||| |  |||||||||| ||||||||    
T  10112070 ttatgtaaacccctataaatatgttgcaa 10112042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 2271318 - 2271197
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttct 141  Q
    |||||||||||||||| |||||| |    ||||||||||||||||| ||||||| ||| || |||||||||| ||||||||       ||| ||||||||    
T  2271318 ttttttgcaatttcttatgtaaatcatgctgaatttcttatataaacccctatatattaggtaatttctttagatttttta-------cttacaatttct 2271226  T
Q  142 tatgt--acgccctataaatgtgttgcaa 168  Q
    |||||  || |||||||||||||||||||    
T  2271225 tatgtaaaccccctataaatgtgttgcaa 2271197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 16523114 - 16523018
Alignment:
Q  120 ttattatttgcttgcaatttcttatgtacgccct-ataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccacttat 215  Q
    |||||||||||||||||||| ||||| |  |||| |||||||||||||||           | |||||||||||||| |||||||||||||||||||    
T  16523114 ttattatttgcttgcaattttttatgcaaaccctcataaatgtgttgcaaatttttttttacccgggctttacaataattctggctccgccacttat 16523018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 9e-68; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 34707253 - 34707069
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34707253 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 34707154  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||||||||||||||||||||||||          || ||||||||| |||||| ||||||||||||||    
T  34707153 tgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttgcccgggctttagaatattcctggctccgccact 34707069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 44164734 - 44164874
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44164734 ggctccgggccaaattttttgcaatttcttgtgtaaatttctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 44164833  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44164834 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 44164874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 10576810 - 10576670
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10576810 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 10576711  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  10576710 tgcttgcaatttcttatgtacgccctataaatgtattgcaa 10576670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 30 - 213
Target Start/End: Original strand, 32876523 - 32876706
Alignment:
Q  30 ctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttg 129  Q
    ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  32876523 ctccgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatttg 32876622  T
Q  130 cttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccactt 213  Q
    ||||||||||||||||||||| |||||||||||||||||          || |||||||||||||||| |||||||||||||||    
T  32876623 cttgcaatttcttatgtacgctctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgccactt 32876706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 24320430 - 24320570
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    |||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24320430 ggctccgggccaaattttttgcaatttcttgtgtaaattcctacgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 24320529  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24320530 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 24320570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 34259655 - 34259526
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34259655 ggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 34259556  T
Q  128 tgcttgcaatttcttatgtacgccctataa 157  Q
    ||||||||||||||||||||||||||||||    
T  34259555 tgcttgcaatttcttatgtacgccctataa 34259526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 29555932 - 29556114
Alignment:
Q  30 ctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttg 129  Q
    ||||||||||| |||||  ||||||||||||||||   |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  29555932 ctccgggccaattttttgacaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatttg 29556031  T
Q  130 cttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||||||||||||||||||||||          ||  ||||||||||||||| ||||||||||||||    
T  29556032 cttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcctgggctttacaatattcctggctccgccact 29556114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 29238134 - 29238274
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||| |||||||  ||||||||||||||||||||||||    
T  29238134 ggctccgggccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctaaaaattggaaaatttctttacattttttattatt 29238233  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    ||||| |||||||||||||| ||||||||||||||||||||    
T  29238234 tgcttacaatttcttatgtaggccctataaatgtgttgcaa 29238274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 29981104 - 29981226
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||    
T  29981104 ggctccgggccaattcttttgcaatttcttgtgtaaatccctatgaatttcttatataaacttctataaattggacaatttctttatattttttattatt 29981203  T
Q  128 tgcttgcaatttcttatgtacgc 150  Q
    |||||||||||||||||||||||    
T  29981204 tgcttgcaatttcttatgtacgc 29981226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 33057648 - 33057789
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca-ttttttattat 126  Q
    |||||||| |||| |||||| ||||||||| |||||| | |||||||||||||||||||  ||||||||||||  ||||||||||| | |||||||||||    
T  33057648 ggctccggcccaattttttttcaatttcttatgtaaatccctatgaatttcttatataatcccctataaattgaacaatttctttagatttttttattat 33057747  T
Q  127 ttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||||||||||||||||||   ||||||||||||||||||    
T  33057748 ttgcttgcaatttcttatgtaaatcctataaatgtgttgcaa 33057789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 19334560 - 19334693
Alignment:
Q  37 ccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca--ttttttattatttgcttgc 134  Q
    |||| |||||||||||||||| ||||||   |||||||||||||||||||| ||||||||||||| ||||||||||| |  |||||||||||||||||||    
T  19334560 ccaatttttttgcaatttcttatgtaaatacctatgaatttcttatataaacccctataaattggacaatttctttagattttttttattatttgcttgc 19334659  T
Q  135 aatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||||||| ||  |||||||||| ||||||||    
T  19334660 aatttcttatataaaccctataaatttgttgcaa 19334693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 17303105 - 17303248
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca--ttttttatta 125  Q
    |||||||  |||| |||||||||||||||| ||||||   |||||||||||||||||||| || | |||||||||||||||||||| |  ||||||||||    
T  17303105 ggctccgacccaatttttttgcaatttcttatgtaaattcctatgaatttcttatataaacccttgtaaattgggcaatttctttagattttttttatta 17303204  T
Q  126 tttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 168  Q
    ||||||||||||||||||||||  || |||||||||||||||||    
T  17303205 tttgcttgcaatttcttatgtaaaccactataaatgtgttgcaa 17303248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 10334315 - 10334173
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacat-tttttattat 126  Q
    ||||| || |||| |||||||||||||||| ||||||   || |||||||||||||||||  | |||||||||||||||||||||| || |||||| |||    
T  10334315 ggctctggcccaatttttttgcaatttcttatgtaaattcctctgaatttcttatataaactcttataaattgggcaatttctttagatatttttaatat 10334216  T
Q  127 ttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 168  Q
    |||||||||||||||||||| |  |||||||||||||||||||    
T  10334215 ttgcttgcaatttcttatgtaaacccctataaatgtgttgcaa 10334173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 9770782 - 9770682
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttct 141  Q
    |||||||||||||||| |||||| |    ||||||||||||||||| | |||| |||||| ||||||||||| | |||| ||||||||||||||||||||    
T  9770782 ttttttgcaatttcttatgtaaatcatcctgaatttcttatataaaccactatgaattggacaatttctttagacttttgattatttgcttgcaatttct 9770683  T
Q  142 t 142  Q
    |    
T  9770682 t 9770682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 42 - 168
Target Start/End: Original strand, 26284383 - 26284510
Alignment:
Q  42 ttttttgcaatttcttgtgtaaac-ctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttc 140  Q
    |||||||||||||||| ||||||  | || ||||||||||||| || |   |||||||||| ||||||||||| |||||||||||||| |||||||||||    
T  26284383 ttttttgcaatttcttatgtaaaatccctctgaatttcttataaaactag-tataaattggacaatttctttagattttttattattttcttgcaatttc 26284481  T
Q  141 ttatgt-acgccctataaatgtgttgcaa 168  Q
    || ||| |  |||||||||||||||||||    
T  26284482 ttttgtaaacccctataaatgtgttgcaa 26284510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 15017896 - 15017817
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt 121  Q
    |||||||||||||||| ||||||   || |||||||||||||||||  | |||||||||| ||||||||||| |||||||    
T  15017896 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaacgcgtataaattggacaatttctttagatttttt 15017817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 41853226 - 41853128
Alignment:
Q  73 aatttcttatataaatccctataaattgggcaatttctttacatttttt--attatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 168  Q
    |||||||||| ||||| ||||||| |||| |||||| |||| |||||||  ||||||||||||||||||  ||| ||  || |||||||||||||||||    
T  41853226 aatttcttatttaaattcctataagttggacaatttttttagatttttttgattatttgcttgcaattttctatataaacctctataaatgtgttgcaa 41853128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 9e-68; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 9231845 - 9232029
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9231845 ggctccgggccaatttttttgcaatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 9231944  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||| ||||||||||||||||||||          || |||||||||||||||| ||||||||||||||    
T  9231945 tgcttgcaatttcttatgtatgccctataaatgtgttgcaattttttttttgcccgggctttacaatattcctggctccgccact 9232029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 24694642 - 24694826
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  24694642 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaatttctttacattttttattatt 24694741  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||||||||||||||||||||||||          || |||||||||||||||| ||||||||||||||    
T  24694742 tgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgccact 24694826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 33 - 168
Target Start/End: Original strand, 14309794 - 14309929
Alignment:
Q  33 cgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgctt 132  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14309794 cgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgctt 14309893  T
Q  133 gcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    ||||||||||||||||||||||||||||||||||||    
T  14309894 gcaatttcttatgtacgccctataaatgtgttgcaa 14309929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 13627677 - 13627537
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  13627677 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacattttttattatt 13627578  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||| | ||||||||||||| ||||||||| ||||||||    
T  13627577 tgcttgtactttcttatgtacgtcctataaatatgttgcaa 13627537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 1727923 - 1728035
Alignment:
Q  27 aggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattat 126  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  1727923 aggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacattttttattat 1728022  T
Q  127 ttgcttgcaattt 139  Q
    || ||||||||||    
T  1728023 ttccttgcaattt 1728035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 28750641 - 28750783
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attat 126  Q
    ||||| ||||||| |||||||||||||||| ||||||    | ||||||||||||||||| |||||||||||||||||||||||||  |||||| |||||    
T  28750641 ggctctgggccaatttttttgcaatttcttatgtaaattcttctgaatttcttatataaacccctataaattgggcaatttctttaatttttttgattat 28750740  T
Q  127 ttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 168  Q
    ||||||| |||||||||||||  | | ||||||||||||||||    
T  28750741 ttgcttgtaatttcttatgtaaactcttataaatgtgttgcaa 28750783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 37 - 168
Target Start/End: Complemental strand, 27863828 - 27863695
Alignment:
Q  37 ccaaattttttgcaattt-cttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgca 135  Q
    ||||| |||||||||||| ||| ||||||  ||| ||||||||||||||||| || |||||||||| ||||||||||| ||||||||||||||| |||||    
T  27863828 ccaaactttttgcaattttcttatgtaaatttctctgaatttcttatataaacccttataaattggacaatttctttagattttttattatttgtttgca 27863729  T
Q  136 atttcttatgtacgc-cctataaatgtgttgcaa 168  Q
    ||||||||||||  |  |||||||||||||||||    
T  27863728 atttcttatgtaaacatctataaatgtgttgcaa 27863695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 13103119 - 13103246
Alignment:
Q  38 caaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaa 136  Q
    ||||||||||||||||| || ||||||   || ||||||||||||||||| |  |||||||||||||||||||||| ||||||| |||||||||||||||    
T  13103119 caaattttttgcaattttttatgtaaattcctctgaatttcttatataaacctttataaattgggcaatttctttagattttttgattatttgcttgcaa 13103218  T
Q  137 tttcttatgtacgc-cctataaatgtgt 163  Q
    ||||| |||||  | |||||||||||||    
T  13103219 tttctaatgtaaacacctataaatgtgt 13103246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 34103808 - 34103703
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttct 141  Q
    ||||||| ||||| || ||||||   || ||||||||||||||||| || ||||||||||| |||||||||| ||||||||||||||| |||||||||||    
T  34103808 ttttttgtaatttattatgtaaattcctctgaatttcttatataaacccgtataaattgggaaatttctttagattttttattatttgtttgcaatttct 34103709  T
Q  142 tatgta 147  Q
    ||||||    
T  34103708 tatgta 34103703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 11212765 - 11212689
Alignment:
Q  71 tgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 147  Q
    ||||||| || |||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||    
T  11212765 tgaattttttctataaatccctataaattgggcaatttctttagatttttaattatttgcttgtaatttcttatgta 11212689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 116 - 212
Target Start/End: Complemental strand, 11084659 - 11084563
Alignment:
Q  116 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||          || ||| |||||||||||| ||||||||||||||    
T  11084659 ttttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccggactttacaatattcctggctccgccact 11084563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 11279634 - 11279536
Alignment:
Q  71 tgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 168  Q
    ||||||| |||||||||| | |||||||| || |||||||||| |||||||||||||||||||||||||||||||| |  | |||||||||||||||||    
T  11279634 tgaattttttatataaattcttataaatttggtaatttctttagattttttattatttgcttgcaatttcttatgtaaatctctataaatgtgttgcaa 11279536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 24497564 - 24497646
Alignment:
Q  27 aggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttc 109  Q
    ||||||||| |||||||||||||||||| |||||||||   || ||||||||||||||||| |||||||||||||||||||||    
T  24497564 aggctccggcccaaattttttgcaattttttgtgtaaattcctctgaatttcttatataaacccctataaattgggcaatttc 24497646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 11084724 - 11084664
Alignment:
Q  31 tccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccc 91  Q
    |||| ||||| |||||||||||||||||||||||   |||||||||||||||||||| |||    
T  11084724 tccgagccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccc 11084664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 8412717 - 8412757
Alignment:
Q  73 aatttcttatataaatccctataaattgggcaatttcttta 113  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  8412717 aatttcttatataaacgcctataaattgggcaatttcttta 8412757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 24500767 - 24500830
Alignment:
Q  104 aatttctttacatttt-ttattatttgcttgcaatttcttatgtacgccc-tataaatgtgttg 165  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||  ||| |||||||||||||    
T  24500767 aatttctttagatttttttattatttgcttgcaatttcatatgtaaacccttataaatgtgttg 24500830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 1535908 - 1535726
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1535908 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 1535809  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgcca 210  Q
    |||||||||||||||||||| ||||||||||||||||||||          || |||||||||||||||| ||||||||||||    
T  1535808 tgcttgcaatttcttatgtatgccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgcca 1535726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 25954887 - 25954703
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  25954887 ggctccgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaactcctataaattgggcaatttctttacattttttattatt 25954788  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||||||||||||||||||||||||          || |||||||||||||||| ||||||||||||||    
T  25954787 tgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgccact 25954703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 34241130 - 34240946
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34241130 ggctccgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 34241031  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||||||||||||||||||||| ||          || |||||||||||||||| ||||||||||||||    
T  34241030 tgcttgcaatttcttatgtacgccctataaatgtgttgtaaaattttttttgcccgggctttacaatattcctggctccgccact 34240946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 37801255 - 37801439
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    |||||||||| ||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37801255 ggctccgggctaaattttttgcaatttcttgtgtaaatttctatgaattttttatataaatccctataaattgggcaaattctttacattttttattatt 37801354  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||||||||||||||||||||||||          || |||||||||||||||| ||||||||||||||    
T  37801355 tgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgccact 37801439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 49284494 - 49284310
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49284494 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 49284395  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    || ||||||||||||||||||||||||||||||||||||||          || |||| ||||||||||| ||||||||||||||    
T  49284394 tgtttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggttttacaatattcctggctccgccact 49284310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 52632633 - 52632471
Alignment:
Q  50 aatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacg 149  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  52632633 aatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttttaatatttgcttgcaatttcttatgtacg 52632534  T
Q  150 ccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||          || |||||||||||||||| ||||||||||||||    
T  52632533 ccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgccact 52632471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 36012176 - 36012316
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    |||| |||||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36012176 ggcttcgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 36012275  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||||||||| ||||||| | | ||||||||||||||||    
T  36012276 tgcttgcaattttttatgtatgtcatataaatgtgttgcaa 36012316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 35019072 - 35018889
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||| |||||||||||||| |||||||||||||||| | |||||||||||||||||||| || |||||||| || ||||||||||||||||||||||||    
T  35019072 ggctctgggccaaattttttacaatttcttgtgtaaatc-ctatgaatttcttatataaacccttataaattaggtaatttctttacattttttattatt 35018974  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    ||||||||||||||||||||| || ||||||||||||||||          |  |||||||||||||||| ||||||||||||||    
T  35018973 tgcttgcaatttcttatgtacaccttataaatgtgttgcaaatttttttttgtccgggctttacaatattcctggctccgccact 35018889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 46583554 - 46583669
Alignment:
Q  50 aatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacg 149  Q
    ||||| ||||||||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46583554 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattaggcaatttctttacattttttattatttgcttgcaatttcttatgtacg 46583653  T
Q  150 ccctataaatgtgttg 165  Q
    || |||||||||||||    
T  46583654 ccatataaatgtgttg 46583669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 16338207 - 16338318
Alignment:
Q  31 tccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgc 130  Q
    |||||||||| ||||||||||||| |||||||||   |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16338207 tccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaatccctataaattggacaatttctttacattttttattatttgc 16338306  T
Q  131 ttgcaatttctt 142  Q
    ||||||||||||    
T  16338307 ttgcaatttctt 16338318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 17888541 - 17888683
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca-ttttttattat 126  Q
    |||||||| ||||||||||| ||||||||| ||||||   |||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||||    
T  17888541 ggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataaccccctataaattgggcaatttctttagatttttttattat 17888640  T
Q  127 ttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 168  Q
    |||||||||||||||||||| |  |||||||||||||||||||    
T  17888641 ttgcttgcaatttcttatgtaaacccctataaatgtgttgcaa 17888683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 102 - 212
Target Start/End: Original strand, 16338309 - 16338419
Alignment:
Q  102 gcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          || ||||||||||||||||||||    
T  16338309 gcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttgcccgggctttacaatatttctg 16338408  T
Q  202 gctccgccact 212  Q
    |||||||||||    
T  16338409 gctccgccact 16338419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 31377526 - 31377385
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attat 126  Q
    |||||||| ||||||||||| ||||||||| |||||| | |||||||||||||||||||  | ||||||||||||||||||||||| ||||||| | |||    
T  31377526 ggctccggcccaaatttttt-caatttcttatgtaaatccctatgaatttcttatataaccctctataaattgggcaatttctttagattttttaactat 31377428  T
Q  127 ttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 168  Q
    |||||||||||||||||||||  || |||||||||||||||||    
T  31377427 ttgcttgcaatttcttatgtaaaccgctataaatgtgttgcaa 31377385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 20818695 - 20818584
Alignment:
Q  37 ccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgca 135  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||||||||  |||||||||||| |||||| |||| ||||||| |||||||| |||||    
T  20818695 ccaaattttttgcaatttcttttgtaaatccctatgaatttcttatataaactcctataaattggtcaatttttttagattttttgattatttgtttgca 20818596  T
Q  136 atttcttatgta 147  Q
    ||||||||||||    
T  20818595 atttcttatgta 20818584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 38 - 168
Target Start/End: Complemental strand, 54090307 - 54090176
Alignment:
Q  38 caaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaa- 136  Q
    |||||||||||||||| ||| |||||| | || ||||||| |||||||||  | ||||||||||||||||| |||| ||||||||||||||||||||||     
T  54090307 caaattttttgcaattccttttgtaaatccctctgaatttattatataaactcttataaattgggcaatttttttagattttttattatttgcttgcaat 54090208  T
Q  137 tttcttatgtacgccctataaatgtgttgcaa 168  Q
    ||| |||||||  ||||||| |||||||||||    
T  54090207 ttttttatgtaaaccctatagatgtgttgcaa 54090176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 168
Target Start/End: Complemental strand, 46474130 - 46473989
Alignment:
Q  29 gctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttt-tattatt 127  Q
    ||||||| ||||||||||||||||||||| ||||||   || ||||||| ||||||||| || |||||||||  ||||||||||| |||||| |||||||    
T  46474130 gctccggcccaaattttttgcaatttcttatgtaaattcctgtgaattttttatataaacccatataaattgtacaatttctttagatttttgtattatt 46474031  T
Q  128 tgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 168  Q
    |||||| |||||||||||| |  || ||||||||||||||||    
T  46474030 tgcttgtaatttcttatgtaaatccttataaatgtgttgcaa 46473989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 10094387 - 10094495
Alignment:
Q  31 tccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttg 129  Q
    ||||| |||||||||||| |||||||| ||||||  ||| ||||||||||||||||| |||||||||||||| ||||| |||| ||||||| ||||||||    
T  10094387 tccggcccaaattttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttatttagattttttgattatttg 10094486  T
Q  130 cttgcaatt 138  Q
    |||||||||    
T  10094487 cttgcaatt 10094495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 168
Target Start/End: Complemental strand, 11054581 - 11054448
Alignment:
Q  40 aattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttcttta-catttttt---attatttgcttgca 135  Q
    |||||||||||||||||| |||||| | |||||||||||||||||||| | |||||||||||||||| ||||||  |||||||    |||||||||||||    
T  11054581 aattttttgcaatttcttatgtaaatccctatgaatttcttatataaacctctataaattgggcaatctctttagtattttttttatttatttgcttgca 11054482  T
Q  136 atttcttatgtacgcc-ctataaatgtgttgcaa 168  Q
    ||||||||||||  ||  ||||||||||||||||    
T  11054481 atttcttatgtaaacctttataaatgtgttgcaa 11054448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 322584 - 322682
Alignment:
Q  72 gaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 168  Q
    |||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||  | ||| ||||||||||||||    
T  322584 gaatttcttatataaacccctataaattggacaatttctttaaattttttgattatttgcttgcaatttcttatgtaaacacctgtaaatgtgttgcaa 322682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 12792231 - 12792364
Alignment:
Q  37 ccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttt-tattatttgcttgca 135  Q
    |||| ||||||| |||||||| ||||||  ||| ||||||||||||||||| ||||||||||||||||||| ||||| ||||||  |||||||||||| |    
T  12792231 ccaatttttttgtaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggcaattactttagatttttagattatttgcttgaa 12792330  T
Q  136 atttcttatgtacgc-cctataaatgtgttgcaa 168  Q
    ||||||||| ||  |  |||||||||||||||||    
T  12792331 atttcttatataaacatctataaatgtgttgcaa 12792364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 47084149 - 47084056
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt 121  Q
    |||||||| | ||||||||||||||||||| ||||||  ||| ||||||||||||||||| |||||||||||||| |||||||||| |||||||    
T  47084149 ggctccggcctaaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttctttagatttttt 47084056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 9742538 - 9742661
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttc 140  Q
    |||||| ||||||||| ||||||   || |||||||||||||| || ||||||||||||||||||||||||| ||||||| ||||||| | |||||||||    
T  9742538 ttttttacaatttcttatgtaaattcctctgaatttcttatattaacccctataaattgggcaatttctttagattttttgattattttcatgcaatttc 9742637  T
Q  141 ttatgtacgc-cctataaatgtgt 163  Q
    |||||||  | |||||||||||||    
T  9742638 ttatgtaaacacctataaatgtgt 9742661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 36851378 - 36851446
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataa 96  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| ||||||||    
T  36851378 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttattatataaacccctataa 36851446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 50328919 - 50328791
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca-ttttttattatttgcttgcaatttc 140  Q
    |||||||||||||||| ||||||   || | ||||||||||||||| | ||||||||||| ||||||||||| | ||||||||||||  ||||||||||     
T  50328919 ttttttgcaatttcttttgtaaattcctcttaatttcttatataaacctctataaattggacaatttctttaaatttttttattattcacttgcaatttt 50328820  T
Q  141 ttatgtacgccc-tataaatgtgttgcaa 168  Q
    |||||||  ||| ||||||||||||||||    
T  50328819 ttatgtaaacccttataaatgtgttgcaa 50328791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 35322704 - 35322837
Alignment:
Q  37 ccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgca 135  Q
    |||| ||||||| ||||| || | ||||  ||| ||||| ||||||||||| | ||||||||||  ||||||||||| ||||||| ||||||||||||||    
T  35322704 ccaatttttttgtaattttttatataaatttctctgaatctcttatataaacctctataaattgaacaatttctttagattttttgattatttgcttgca 35322803  T
Q  136 atttcttatgt-acgccctataaatgtgttgcaa 168  Q
    ||||||||| | |  ||||||||| |||||||||    
T  35322804 atttcttatataaacccctataaaagtgttgcaa 35322837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 19124729 - 19124849
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca-ttttttattat 126  Q
    |||||||| | || |||||||||||||||| ||||||   || |||||||||||||||||   || |||||||  ||||||||||| | |||||||||||    
T  19124729 ggctccggcctaatttttttgcaatttcttatgtaaattcctctgaatttcttatataaacatctgtaaattgatcaatttctttaaatttttttattat 19124828  T
Q  127 ttgcttgcaatttcttatgta 147  Q
    || ||| ||||||||||||||    
T  19124829 ttacttacaatttcttatgta 19124849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 5780790 - 5780838
Alignment:
Q  73 aatttcttatataaatccctataaattgggcaatttctttacatttttt 121  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||    
T  5780790 aatttcttatataaatccttataaattgggcaatttctttaaatttttt 5780838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 21853334 - 21853194
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21853334 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaaccctataaattgggcaatttctttacattttttattatt 21853235  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21853234 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 21853194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 13856236 - 13856051
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    |||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13856236 ggctccgggccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattggacaatttctttacattttttattatt 13856137  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccactt 213  Q
    |||||||||||||||||||||||||||||||||||||||||          ||  ||||||||||||||| |||||||||||||||    
T  13856136 tgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttgcctgggctttacaatattcctggctccgccactt 13856051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 44994959 - 44995144
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccct-ataaattgggcaatttctttacattttttattat 126  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  44994959 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaaccccttataaattgggcaatttctttacattttttattat 44995058  T
Q  127 ttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    ||||||||||||||||||||||||||||||||||||||||||          || |||||||||| ||||| ||||||||||||||    
T  44995059 ttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctttactatattcctggctccgccact 44995144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 31 - 210
Target Start/End: Original strand, 40845911 - 40846090
Alignment:
Q  31 tccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgc 130  Q
    |||||| ||||||||||||||||| ||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40845911 tccgggtcaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgc 40846010  T
Q  131 ttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgcca 210  Q
    ||||||||||||||||||||||||||||||||||||||          || |||||||||||||||| ||||||||||||    
T  40846011 ttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgcca 40846090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 8950495 - 8950635
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8950495 ggctctgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 8950594  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||| ||||||||||||||||||||||||| ||||||||    
T  8950595 tgcttgaaatttcttatgtacgccctataaatatgttgcaa 8950635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 32352984 - 32352844
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||| |||||||||||||||||| |||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  32352984 ggctccgggccaatttttttgcaatttcttgtataaatccctatgaatttcttatataaacccctataaattaggcaatttctttacattttttattatt 32352885  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  32352884 tgcttacaatttcttatgtacgccctataaatgtgttgcaa 32352844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 5391594 - 5391411
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||| ||||| |||||  |||||||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  5391594 ggctccgcgccaattttttgacaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatt 5391495  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||||||||||||||||||||||||          || |||||||||||||||| ||||||||||||||    
T  5391494 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa-attttttttgcccgggctttacaatattcctggctccgccact 5391411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 23467507 - 23467625
Alignment:
Q  50 aatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacg 149  Q
    ||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467507 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacg 23467606  T
Q  150 ccctataaatgtgttgcaa 168  Q
    |||||||||||||||||||    
T  23467607 ccctataaatgtgttgcaa 23467625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 3178840 - 3178699
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    |||||||| ||||||||||| |||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||  |||||| |||||    
T  3178840 ggctccggcccaaatttttttcaatttcttgtgtaaatccctatgaatttcttatataaatctctataaattgggcaatttctttagttttttttttatt 3178741  T
Q  128 tgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 168  Q
    ||||||||||||| ||||||  | ||||||||| ||||||||    
T  3178740 tgcttgcaatttcgtatgtaaactcctataaatatgttgcaa 3178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 27 - 168
Target Start/End: Complemental strand, 1781900 - 1781757
Alignment:
Q  27 aggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-atta 125  Q
    |||||| || ||||||||||||||||||||| |||||| | || ||||||||||||||||| ||| ||||||||||||||||||||| ||||||| ||||    
T  1781900 aggctctggcccaaattttttgcaatttcttatgtaaatccctctgaatttcttatataaaccccaataaattgggcaatttctttagattttttgatta 1781801  T
Q  126 tttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 168  Q
    ||||||||||||||| ||||| |  |||||||||||||||||||    
T  1781800 tttgcttgcaatttcgtatgtaaacccctataaatgtgttgcaa 1781757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 10839371 - 10839513
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attat 126  Q
    |||||||  ||||||||||||||||||||| ||||||  ||| ||||||||||||||||| | ||||||||||||||||||||||| ||||||| |||||    
T  10839371 ggctccgacccaaattttttgcaatttcttatgtaaatttctctgaatttcttatataaacctctataaattgggcaatttctttagattttttgattat 10839470  T
Q  127 ttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 168  Q
    |||||||||||||||||||||  | |||||| |||||||||||    
T  10839471 ttgcttgcaatttcttatgtaaacacctatacatgtgttgcaa 10839513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 43347327 - 43347468
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attat 126  Q
    |||||||  ||||||||||||||||||||| ||||||   || ||||||||||||||||| ||||| ||||||||||||||||||| ||||||| |||||    
T  43347327 ggctccgacccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctacaaattgggcaatttctttagattttttgattat 43347426  T
Q  127 ttgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||||||||||||||||||  |||||||| | ||||||||    
T  43347427 ttgcttgcaatttcttatgtaaaccctataattatgttgcaa 43347468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 20382655 - 20382514
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca-ttttttattat 126  Q
    |||||||| |||||||||||  |||||||| |||||| | |||||||||||||||||||| |||||||||||||| |||||||||| | |||||||||||    
T  20382655 ggctccggcccaaattttttt-aatttcttatgtaaatccctatgaatttcttatataaacccctataaattgggaaatttctttagatttttttattat 20382557  T
Q  127 ttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 168  Q
    |||||||||||||||||||||  | |||||||||| |||||||    
T  20382556 ttgcttgcaatttcttatgtaaactcctataaatgcgttgcaa 20382514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 19649363 - 19649506
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt--atta 125  Q
    ||||||||  ||| ||||||| |||||||| |||||| | |||||||||||||||||||| || |||||||||| ||||||||||| |||||||  ||||    
T  19649363 ggctccggcacaacttttttgtaatttcttatgtaaatcgctatgaatttcttatataaacccttataaattggacaatttctttagattttttggatta 19649462  T
Q  126 tttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 168  Q
    ||||||||||||||||||||| |  |||||||||||||||||||    
T  19649463 tttgcttgcaatttcttatgtaattccctataaatgtgttgcaa 19649506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 36539769 - 36539627
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attat 126  Q
    |||||||| | ||||||| ||||||||||| |||||| | |||| ||||||||||||||  ||||||||||||||||||||||||| ||||||| |||||    
T  36539769 ggctccggcctaaattttatgcaatttcttatgtaaatccctataaatttcttatataatcccctataaattgggcaatttctttaaattttttgattat 36539670  T
Q  127 ttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 168  Q
    ||| |||||||||| ||||| |  |||||||||||||||||||    
T  36539669 ttgtttgcaatttcctatgtaaacccctataaatgtgttgcaa 36539627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 42 - 164
Target Start/End: Complemental strand, 54547027 - 54546904
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttct 141  Q
    ||||||||||||||||  |||||   || ||||||||||||||||| ||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||    
T  54547027 ttttttgcaatttcttacgtaaattcctttgaatttcttatataaacccctataaattggacaatttctttagatttttgattatttgcttacaatttct 54546928  T
Q  142 tatgt-acgccctataaatgtgtt 164  Q
    ||||| |  |||||||||||||||    
T  54546927 tatgtaaatccctataaatgtgtt 54546904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 22845362 - 22845484
Alignment:
Q  37 ccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaa 136  Q
    ||||||||||||||||||||| ||||||      | ||||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||||||    
T  22845362 ccaaattttttgcaatttcttatgtaaattcacctaaatttcttatataaacccctataaatttgacaatttctttagattttttattatttgcttgcaa 22845461  T
Q  137 tttcttatgtacgccctataaat 159  Q
    ||| |||| ||  ||||||||||    
T  22845462 ttttttatataaaccctataaat 22845484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 8926889 - 8926762
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttc 140  Q
    |||||||||||||| | ||||||   || ||||||||| ||||||| ||||||||||| |||||||||| || ||||||| |||||||||||||||||||    
T  8926889 ttttttgcaatttcatatgtaaattcctctgaatttctgatataaacccctataaatttggcaatttctgtagattttttgattatttgcttgcaatttc 8926790  T
Q  141 ttatg-tacgccctataaatgtgttgca 167  Q
    ||||| ||  || |||||||||||||||    
T  8926789 ttatgttaacccttataaatgtgttgca 8926762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 33103866 - 33103739
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttct 141  Q
    |||||||||||||||| ||||||   |  | |||||||||||||| ||||||||||||||  ||||| |||| ||||||||||||||||||| |||||||    
T  33103866 ttttttgcaatttcttatgtaaattcccttaaatttcttatataagtccctataaattggataatttatttaaattttttattatttgcttgtaatttct 33103767  T
Q  142 tatgt-acgccctataaatgtgttgcaa 168  Q
    ||||| |  || ||||||||||||||||    
T  33103766 tatgtaaatccttataaatgtgttgcaa 33103739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 46685779 - 46685891
Alignment:
Q  32 ccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgct 131  Q
    |||| |||||||||||||| |||||| |||||| | |  | |||||||||||||||  |||||||||| | ||||||||||| ||||||||||||||| |    
T  46685779 ccggcccaaattttttgca-tttcttatgtaaatccccctaaatttcttatataaactcctataaatttgacaatttctttatattttttattatttgtt 46685877  T
Q  132 tgcaatttcttatg 145  Q
    ||||||||||||||    
T  46685878 tgcaatttcttatg 46685891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 47889823 - 47889731
Alignment:
Q  68 ctatgaatttcttatataaatccctataaattgggcaatttctttaca-ttttttattatttgcttg-caatttcttatgtacgccctataaa 158  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| |||| |||||||| |||||  |||||||||    
T  47889823 ctatgaatttcttatataaattcctataaattgggcaatttctttaaatttttttattatttacttgacaatttctaatgtaaaccctataaa 47889731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 6280352 - 6280491
Alignment:
Q  30 ctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttg 129  Q
    |||||| | ||||||| ||||||||||| ||||||  ||  ||||||||||||||||| | ||||||||| | |||||| |||| |||||| || |||||    
T  6280352 ctccggcctaaattttgtgcaatttcttatgtaaatttccctgaatttcttatataaacctctataaatttgacaatttatttagatttttgataatttg 6280451  T
Q  130 cttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 168  Q
    ||||| |||| |||||||  ||  ||||||||||||||||    
T  6280452 cttgccattttttatgtaaacctttataaatgtgttgcaa 6280491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 35 - 143
Target Start/End: Complemental strand, 51336339 - 51336231
Alignment:
Q  35 ggccaaattttttgcaatttcttgtgtaaacctcta-tgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttg 133  Q
    |||||| ||||||||||||| || ||||||  |||  ||||||| |||||||||||  |||||||| | ||||||||||| |||||||||||||| ||||    
T  51336339 ggccaatttttttgcaattttttatgtaaat-tctcctgaattttttatataaatctttataaatttgacaatttctttaaattttttattatttacttg 51336241  T
Q  134 caatttctta 143  Q
    ||||||||||    
T  51336240 caatttctta 51336231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 48206943 - 48206849
Alignment:
Q  76 ttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 168  Q
    |||||||||||| ||||||||||| | |||||| |||| ||||||| ||||||| ||||||||||||||||||  | | ||||||||||||||||    
T  48206943 ttcttatataaacccctataaatttgacaatttttttagattttttgattatttacttgcaatttcttatgtaaacacttataaatgtgttgcaa 48206849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 36825965 - 36826087
Alignment:
Q  40 aattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatt 138  Q
    |||||||||||||||||| ||||||||||| | ||||||| ||||||| || ||||        |||||||||| ||||||| || ||||||||||| ||    
T  36825965 aattttttgcaatttcttatgtaaacctctttaaatttctcatataaacccttata--------aatttctttaaattttttaatgatttgcttgcagtt 36826056  T
Q  139 tcttatgt-acgccctataaatgtgttgcaa 168  Q
    |||||||| |  |||||||||||||||||||    
T  36826057 tcttatgtaaacccctataaatgtgttgcaa 36826087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 27642787 - 27642723
Alignment:
Q  38 caaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattggg 102  Q
    |||||||||||||||||||| |||||| |  | |||||||||||||||||||| |||||||||||    
T  27642787 caaattttttgcaatttcttatgtaaatccttttgaatttcttatataaatccttataaattggg 27642723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 19644327 - 19644458
Alignment:
Q  37 ccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaa-tttctttacatttttt--attatttgcttg 133  Q
    |||| ||||||| ||||| || ||||||   |||||||||| |||||||||||  |||||||||  ||| ||| |||| |||||||  |||||||| |||    
T  19644327 ccaatttttttgtaattttttatgtaaattgctatgaattttttatataaatctttataaattgaacaattttttttagattttttggattatttgattg 19644426  T
Q  134 caatttcttatgt-acgccctataaatgtgtt 164  Q
    ||||||||||||| |  |||||||||||||||    
T  19644427 caatttcttatgtaattccctataaatgtgtt 19644458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 791906 - 791812
Alignment:
Q  73 aatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 168  Q
    |||||||||||||||| ||||||||||| | |||||||||| ||||||| ||||||   ||| |||||||||||||  | ||||| ||||||||||||    
T  791906 aatttcttatataaattcctataaattgcgtaatttctttatattttttgattatt---ttgtaatttcttatgtaaacacctattaatgtgttgcaa 791812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 39352321 - 39352219
Alignment:
Q  37 ccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaa 136  Q
    ||||| ||||||||||||||| | ||||  ||| | ||||||||||||||||| |||||||||   ||||||||||| |     ||||||||||||||||    
T  39352321 ccaaaatttttgcaatttcttat-taaatttctctaaatttcttatataaatctctataaatttaacaatttctttaaaaaaaatattatttgcttgcaa 39352223  T
Q  137 tttc 140  Q
    ||||    
T  39352222 tttc 39352219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 38397735 - 38397595
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38397735 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 38397636  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  38397635 tgcttgcaatttcttatgtacgtcctataaatgtgttgcaa 38397595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 31 - 212
Target Start/End: Complemental strand, 23218619 - 23218438
Alignment:
Q  31 tccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgc 130  Q
    ||||||||||| |||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23218619 tccgggccaaagtttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatttgc 23218520  T
Q  131 ttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||| |||||||||||||||||||          || |||||||||||||||| ||||||||||||||    
T  23218519 ttgcaatttcttatgtactccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgccact 23218438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 37169024 - 37169208
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37169024 ggctccgggccaaattttttgcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 37169123  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||||||||||||||||||| ||||          || |||||||||||||||| ||||||| ||||||    
T  37169124 tgcttgcaatttcttatgtacgccctataaatgtgtggcaaatttttttttgcccgggctttacaatattcctggctctgccact 37169208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 6257401 - 6257541
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  6257401 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatacaaacccctataaattgggcaatttctttacattttttattatt 6257500  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  6257501 tgcttgcaatttcttatatacgccctataaatgtgttgcaa 6257541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 16618561 - 16618701
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    |||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||  |||||||||||| |||||| |||| |||||||||||||    
T  16618561 ggctccgggccaaattttttacaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattggacaatttttttatattttttattatt 16618660  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  16618661 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 16618701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 39862479 - 39862618
Alignment:
Q  29 gctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattattt 128  Q
    |||||||||||| |||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  39862479 gctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttagattttttattattt 39862578  T
Q  129 gcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  39862579 gcttgcaatttcttatatacgccctaaaaatgtgttgcaa 39862618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 15631751 - 15631613
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccc-tataaattgggcaatttctttacattttttattat 126  Q
    |||||| ||||||||||||| ||||||||||| |||| | |||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  15631751 ggctccaggccaaattttttacaatttcttgtataaatccctatgaatttcttatataaaccccctataaattggacaatttctttacattttttattat 15631652  T
Q  127 ttgcttgcaatttcttatgtacgccctataaatgtgttg 165  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  15631651 ttgcttgcaatttcttatgtacgccctataaatgcgttg 15631613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 8456954 - 8457096
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca-ttttttattat 126  Q
    |||||||| ||||||||||| ||||||||| |||||| | |||||||||||||||||||  ||||||||||||||||||||||||| | |||||||||||    
T  8456954 ggctccggcccaaatttttttcaatttcttatgtaaatccctatgaatttcttatataaccccctataaattgggcaatttctttagatttttttattat 8457053  T
Q  127 ttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 168  Q
    |||||||||||||||||||| |  |||||||||| ||||||||    
T  8457054 ttgcttgcaatttcttatgtaaacccctataaatatgttgcaa 8457096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 10081268 - 10081140
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca-ttttttattatttgcttgcaatttc 140  Q
    |||||| ||||||||| |||||| | |||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||| |||||||    
T  10081268 tttttttcaatttcttatgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttagatttttttattatttgcttacaatttc 10081169  T
Q  141 ttatgtacgc-cctataaatgtgttgcaa 168  Q
    |||||||  | ||||||||||||||||||    
T  10081168 ttatgtaaactcctataaatgtgttgcaa 10081140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 36769067 - 36769206
Alignment:
Q  30 ctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttg 129  Q
    |||||| ||||||||||||||||||||| ||||||   || ||||||||||||||||| | |||| |||| ||||||||||||| |||||| ||||||||    
T  36769067 ctccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacctctatgaattaggcaatttctttagatttttgattatttg 36769166  T
Q  130 cttgcaatttcttatgt-acgccctataaatgtgttgcaa 168  Q
    ||||||||||| ||||| |  |||||||||||||||||||    
T  36769167 cttgcaatttcatatgtaaacccctataaatgtgttgcaa 36769206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 42 - 165
Target Start/End: Original strand, 614397 - 614522
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca-ttttttattatttgcttgcaatttc 140  Q
    |||||||||||||||| ||||||   || ||||||| ||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  614397 ttttttgcaatttcttatgtaaattcctctgaattttttatataaatccctataaatttggcaatttctttagatttttttattatttgcttgcaatttc 614496  T
Q  141 ttatgtacgc-cctataaatgtgttg 165  Q
    |||||||  | |||||||||||||||    
T  614497 ttatgtaaacacctataaatgtgttg 614522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 11856432 - 11856290
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attat 126  Q
    |||| ||| |||| |||| || |||||||| |||||| | || ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  11856432 ggcttcggcccaagttttctgtaatttcttatgtaaatcgctctgaatttcttatataaatcactataaattgggcaatttctttagattttttgattat 11856333  T
Q  127 ttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 168  Q
    || ||||||||||||||||||  | ||||||||| ||||||||    
T  11856332 ttacttgcaatttcttatgtaaactcctataaatatgttgcaa 11856290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 37 - 147
Target Start/End: Original strand, 9737981 - 9738094
Alignment:
Q  37 ccaaattttttgcaatttcttgtgtaaacctc--tatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttg 133  Q
    |||| |||||| ||||||||| ||||||  ||  ||||||||||||||||||||||||||||||||| ||||||||||| |||||||  |||||||||||    
T  9737981 ccaattttttttcaatttcttatgtaaaaatccctatgaatttcttatataaatccctataaattggacaatttctttagattttttgtttatttgcttg 9738080  T
Q  134 caatttcttatgta 147  Q
    ||||||||||||||    
T  9738081 caatttcttatgta 9738094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 25560330 - 25560460
Alignment:
Q  40 aattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatt-ttttattatttgcttgcaatt 138  Q
    |||||||| ||||||||| |||||| |  ||| |||||||||||||||   ||||||||||| ||||||||||| ||| |||||||||||||||||||||    
T  25560330 aatttttttcaatttcttatgtaaatccttataaatttcttatataaacatctataaattggacaatttctttagattattttattatttgcttgcaatt 25560429  T
Q  139 tcttatgtacgccc-tataaatgtgttgcaa 168  Q
    |||||||||  ||| ||||||||||||||||    
T  25560430 tcttatgtaaacccatataaatgtgttgcaa 25560460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 40 - 168
Target Start/End: Complemental strand, 42119747 - 42119617
Alignment:
Q  40 aattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca-ttttttattatttgcttgcaatt 138  Q
    ||||||||| |||||||| ||||||   || ||||||||||||||||| | ||||||||||| ||||||||||| | |||||||||||||| ||| ||||    
T  42119747 aattttttgtaatttcttatgtaaattcctctgaatttcttatataaacctctataaattggacaatttctttagatttttttattatttgtttgtaatt 42119648  T
Q  139 tcttatgt-acgccctataaatgtgttgcaa 168  Q
    |||||||| |  |||||||||||||||||||    
T  42119647 tcttatgtaaacccctataaatgtgttgcaa 42119617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 27916266 - 27916134
Alignment:
Q  39 aaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca-ttttttattatttgcttgcaat 137  Q
    ||||||||||||||||||| ||||||   || |||||||||||||||||  ||||||||||| |||||||| ||| | |||||||||||||| |||||||    
T  27916266 aaattttttgcaatttcttatgtaaattcctctgaatttcttatataaactcctataaattgagcaatttcattagatttttttattatttgtttgcaat 27916167  T
Q  138 ttcttatgt--acgccctataaatgtgttgcaa 168  Q
    ||||||| |  ||  ||||||||||||||||||    
T  27916166 ttcttatataaacctcctataaatgtgttgcaa 27916134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 29491414 - 29491521
Alignment:
Q  37 ccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgca 135  Q
    |||||| |||||||||||||| ||||||  |||||||||||||||||| || ||||||||||||| ||| ||||||| ||||||| ||||||||||||||    
T  29491414 ccaaatcttttgcaatttcttatgtaaatttctatgaatttcttatat-aacccctataaattggacaa-ttctttaaattttttgattatttgcttgca 29491511  T
Q  136 atttcttatg 145  Q
    ||||||||||    
T  29491512 atttcttatg 29491521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 33271263 - 33271377
Alignment:
Q  30 ctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttg 129  Q
    |||||| |||| |||||| ||||||||| ||||||   |  ||||||||||||||||| | ||||||||||| ||||||||||| |||||||||||||||    
T  33271263 ctccggcccaatttttttacaatttcttatgtaaattccgttgaatttcttatataaacctctataaattggacaatttctttatattttttattatttg 33271362  T
Q  130 cttgcaatttcttat 144  Q
     ||| ||||||||||    
T  33271363 tttgtaatttcttat 33271377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 6174874 - 6174762
Alignment:
Q  37 ccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccc--tataaattgggcaatttctttacattttttattatttgcttgc 134  Q
    |||||||||||| ||||||||  |||||    | ||||||||||||||||| |||  |||||||||| ||||||||||| ||||||||||||||||||||    
T  6174874 ccaaattttttgtaatttcttacgtaaattcttctgaatttcttatataaacccccctataaattggacaatttctttatattttttattatttgcttgc 6174775  T
Q  135 aatttcttatgta 147  Q
    |||||| ||||||    
T  6174774 aatttcctatgta 6174762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 3341110 - 3341230
Alignment:
Q  27 aggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttctt-atataaatccctataaattgggcaatttctttacattttttatta 125  Q
    |||||| || ||||||||||||||||||||| ||||||  ||| ||||||| || ||||||  |||||||||||||| ||||||||||  ||||| ||||    
T  3341110 aggctctggcccaaattttttgcaatttcttatgtaaat-tctctgaatttttttatataatcccctataaattgggaaatttctttagctttttgatta 3341208  T
Q  126 tttgcttgcaatttcttatgta 147  Q
    ||||||| |||||| |||||||    
T  3341209 tttgctttcaattttttatgta 3341230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 10115297 - 10115185
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attat 126  Q
    |||||||| |||| ||||||||||||| || ||||||   || || |||||||||||||| ||| ||||||| | ||||||||||| ||||||| |||||    
T  10115297 ggctccggcccaatttttttgcaattttttatgtaaattcctctggatttcttatataaaccccaataaattagacaatttctttagattttttaattat 10115198  T
Q  127 ttgcttgcaattt 139  Q
    |||||||||||||    
T  10115197 ttgcttgcaattt 10115185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 147
Target Start/End: Original strand, 29790219 - 29790328
Alignment:
Q  37 ccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaa 136  Q
    ||||| ||||| ||||||||| ||||||    ||||||||||||||||||| |  ||||||||||||||||||||||  ||||| |||||||||||  ||    
T  29790219 ccaaaatttttacaatttcttatgtaaattcttatgaatttcttatataaacctttataaattgggcaatttcttta-gtttttgattatttgcttttaa 29790317  T
Q  137 tttcttatgta 147  Q
    |||||||||||    
T  29790318 tttcttatgta 29790328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 10052491 - 10052606
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attat 126  Q
    |||||||| |||| |||||| ||||||||| |||||| | || |||| | ||||||||||   ||||||||| || |||||||||| | ||||  |||||    
T  10052491 ggctccggcccaatttttttacaatttcttatgtaaatccctctgaactacttatataaacgtctataaattaggtaatttctttaaaattttagattat 10052590  T
Q  127 ttgcttgcaatttctt 142  Q
    ||||||||||||||||    
T  10052591 ttgcttgcaatttctt 10052606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 19322058 - 19322106
Alignment:
Q  73 aatttcttatataaatccctataaattgggcaatttctttacatttttt 121  Q
    |||||||||||||||  |||||||||||||||||| ||||| |||||||    
T  19322058 aatttcttatataaactcctataaattgggcaattactttagatttttt 19322106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 33188403 - 33188451
Alignment:
Q  98 ttgggcaatttctttacattttttattatttgcttgcaatttcttatgt 146  Q
    ||||||||||||  || ||||||||||||||||||| ||||||||||||    
T  33188403 ttgggcaatttcaataaattttttattatttgcttgtaatttcttatgt 33188451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 22903329 - 22903252
Alignment:
Q  95 aaattgggcaatttcttta-cattttttat--tatttgcttgcaatttcttatgtacgcc-ctataaatgtgttgcaa 168  Q
    |||||||||||||||||||   ||||||||  | ||||||||||||||||||||||  || |||||||||||||||||    
T  22903329 aaattgggcaatttctttagttttttttattctttttgcttgcaatttcttatgtaaacctctataaatgtgttgcaa 22903252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 15475408 - 15475505
Alignment:
Q  51 atttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttt-tattatttgcttgcaatttcttatgta 147  Q
    ||||||| ||||||  ||| | ||||| |||||||||||  |||||||||   |||||||||| |||||| |||||||| || | |||||||||||||    
T  15475408 atttcttatgtaaatttctcttaattttttatataaatctatataaattgaaaaatttctttaaatttttgtattattttctcgtaatttcttatgta 15475505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 49902605 - 49902465
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  49902605 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaatagggcaatttctttacattttttattatt 49902506  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  49902505 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 49902465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 42517285 - 42517473
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaat----ccctataaattgggcaatttctttacattttttat 123  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||     |||||||||||||||||||||||||||||||||||    
T  42517285 ggctccgggccaaattttttgcaatttcttgtgtaaatccctatgaatttcttatataaacaaacccctataaattgggcaatttctttacattttttat 42517384  T
Q  124 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||          || |||||||||||||||| ||||||||||||||    
T  42517385 tatttgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcacgggctttacaatattcctggctccgccact 42517473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 33 - 211
Target Start/End: Complemental strand, 3346918 - 3346740
Alignment:
Q  33 cgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgctt 132  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  3346918 cgggccaaattttttgcaatttgttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatttgctt 3346819  T
Q  133 gcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccac 211  Q
    ||||||||||||||||||||||||||||||||||||          || |||||||||||||||| |||||||||||||    
T  3346818 gcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccgggctttacaatattcctggctccgccac 3346740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 48392397 - 48392537
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48392397 ggctccgagccaatttttttgcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcattacattttttattatt 48392496  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48392497 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 48392537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 7742770 - 7742954
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||| || || ||||||||||||||||||||||| |  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7742770 ggctccgagcaaatttttttgcaatttcttgtgtaaatccttatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 7742869  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||||||||||||||||||||||||          |||||| |||||||||||| ||||||||||||||    
T  7742870 tgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgctcggactttacaatattcctggctccgccact 7742954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 5975125 - 5974988
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    |||||||||||||||||||| |||||||||||||||| | ||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  5975125 ggctccgggccaaatttttttcaatttcttgtgtaaatccctaagaatttcttatataaacccctataaattaggcaatttctttacattttttattatt 5975026  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttg 165  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5975025 tgcttgcaatttcttatgtacgccctataaatgtgttg 5974988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 10156007 - 10156191
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||    
T  10156007 ggctccgggccaatttttttgcaatttcttgtgtaaattcctatgaatttcttatataaacttctataaattggacaatttctttatattttttattatt 10156106  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||||||||||||||||||||||||          || | |||||||||||||||||||||||||||||    
T  10156107 tgcttgcaatttcttatgtacgccctataaatgtgttgcaaatttttttttgcccaggctttacaatatttctggctccgccact 10156191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 47022839 - 47022699
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||| ||||||||||||| |||||||||||||    
T  47022839 ggctccgggccaaattttttgcaatttcttgtgtaaatctctatgaatttcttatataaactcctataaattaggcaatttctttatattttttattatt 47022740  T
Q  128 tgcttgcaatttcttatgtacgccctataaatgtgttgcaa 168  Q
    | |||| ||||||||||||||||||||||||| ||||||||    
T  47022739 tacttgtaatttcttatgtacgccctataaatatgttgcaa 47022699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 50 - 212
Target Start/End: Complemental strand, 23908400 - 23908238
Alignment:
Q  50 aatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacg 149  Q
    ||||| |||||||||   |||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||    
T  23908400 aattttttgtgtaaattcctatgaatttcttatataaatccctataaattggacaatttctttatgttttttattatttgcttgcaatttcttatgtacg 23908301  T
Q  150 ccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    |||||||||||||||||||          || |||||||||||||||| ||||||||||||||    
T  23908300 ccctataaatgtgttgcaattttttttttgcccgggctttacaatattcctggctccgccact 23908238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 50 - 212
Target Start/End: Original strand, 29149561 - 29149723
Alignment:
Q  50 aatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgtacg 149  Q
    ||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29149561 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacgttttttattatttgcttgcaatttcttatgtacg 29149660  T
Q  150 ccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctggctccgccact 212  Q
    ||||||| |||||||||||          || ||| |||||||||||| ||||||||||||||    
T  29149661 ccctatacatgtgttgcaaatttttttttgcccggactttacaatattcctggctccgccact 29149723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 38859988 - 38859849
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttaca-ttttttattat 126  Q
    |||||||| ||||||||||| ||||||||| ||||||   |||||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||    
T  38859988 ggctccggcccaaatttttttcaatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttttttagatttttttattat 38859889  T
Q  127 ttgcttgcaatttcttatgt-acgccctataaatgtgttg 165  Q
    |||||||||||||||||||| |  ||||||||||||||||    
T  38859888 ttgcttgcaatttcttatgtaaacccctataaatgtgttg 38859849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 10907639 - 10907781
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attat 126  Q
    |||||||| ||||||||||||||||||||| ||||||   || ||||||||||||||||| ||||||||||  | ||||||||||| ||||||| |||||    
T  10907639 ggctccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctataaatcagacaatttctttagattttttgattat 10907738  T
Q  127 ttgcttgcaatttcttatgtacgc-cctataaatgtgttgcaa 168  Q
    |||||||||||||||||||||  | ||||||||||||||||||    
T  10907739 ttgcttgcaatttcttatgtagacacctataaatgtgttgcaa 10907781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 27 - 147
Target Start/End: Complemental strand, 30745482 - 30745361
Alignment:
Q  27 aggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-atta 125  Q
    ||||||||  |||||| ||||||||||| || ||||||  ||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||    
T  30745482 aggctccgacccaaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttttgatta 30745383  T
Q  126 tttgcttgcaatttcttatgta 147  Q
    ||| ||||||||||||||||||    
T  30745382 tttacttgcaatttcttatgta 30745361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 27 - 147
Target Start/End: Complemental strand, 30766933 - 30766812
Alignment:
Q  27 aggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-atta 125  Q
    ||||||||  |||||| ||||||||||| || ||||||  ||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||    
T  30766933 aggctccgacccaaatattttgcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaatttctttaaattttttgatta 30766834  T
Q  126 tttgcttgcaatttcttatgta 147  Q
    ||| ||||||||||||||||||    
T  30766833 tttacttgcaatttcttatgta 30766812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 5558431 - 5558334
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttc 140  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||| ||||||||||||| ||||||||||| |||||| |||||||||||||||||||    
T  5558431 ttttttgcaatttcttatgtaaacct-tccgaatttcttatataaacccctataaattggacaatttctttagatttttgattatttgcttgcaatttc 5558334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 168
Target Start/End: Complemental strand, 42456700 - 42456566
Alignment:
Q  37 ccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttcttt-acattttttattatttgcttgca 135  Q
    ||||||||||||| ||||||| ||||||   |||||||||||||||||||| |||||||||||||||||||||||| | |   |||||||| | ||||||    
T  42456700 ccaaattttttgctatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttaaaaaaatttattatctacttgca 42456601  T
Q  136 atttcttatgt--acgccctataaatgtgttgcaa 168  Q
    |||||||||||  |  |||||||||||||||||||    
T  42456600 atttcttatgtaaatcccctataaatgtgttgcaa 42456566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 26835461 - 26835333
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttc 140  Q
    ||||||||||||| || ||||||    |||||||||||||||||||  |||||||||||  |||||| |||| ||||||| |||||||||||||||||||    
T  26835461 ttttttgcaatttattatgtaaattcatatgaatttcttatataaactcctataaattgaacaatttttttagattttttgattatttgcttgcaatttc 26835362  T
Q  141 ttatgtacgccc-tataaatgtgttgcaa 168  Q
    | |||||  ||| ||||||||||||||||    
T  26835361 tcatgtaaacccatataaatgtgttgcaa 26835333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 37189774 - 37189697
Alignment:
Q  30 ctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaattt 108  Q
    |||||| |||||||||| |||||||||| |||||| |||||||||||||||||||||||| ||||||||||| ||||||    
T  37189774 ctccggcccaaattttt-gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 37189697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 26511625 - 26511739
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 127  Q
    |||||||| | || |||||||||||||||| |||||||| |  |||||||||||||||||| ||| |||||||   |||||||||| |||||| ||||||    
T  26511625 ggctccggcctaatttttttgcaatttcttatgtaaaccccc-tgaatttcttatataaattcctgtaaattgaataatttctttaaatttttgattatt 26511723  T
Q  128 tgcttgcaatttctta 143  Q
    | ||| ||||||||||    
T  26511724 tacttacaatttctta 26511739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 30252787 - 30252856
Alignment:
Q  79 ttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttcttatgta 147  Q
    ||||||||||||||||||||| | ||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  30252787 ttatataaatccctataaattagacaacttctttagattttttgattatttgcttgcaatttcttatgta 30252856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 13132017 - 13131914
Alignment:
Q  44 ttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttctta 143  Q
    ||||| |||||||| ||||||   || | ||||| ||||||||||| ||||||||||| |||||||||||  |||||  |||| | ||||||||||||||    
T  13132017 ttttgtaatttcttatgtaaattcctctaaattttttatataaatcactataaattggacaatttctttagctttttacttatctccttgcaatttctta 13131918  T
Q  144 tgta 147  Q
    ||||    
T  13131917 tgta 13131914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 14796998 - 14796871
Alignment:
Q  43 tttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttct 141  Q
    |||||||||||| || ||||||   || ||||||||||||||| |  | |||||||| ||| ||| ||||| ||||||  | ||||||||||||||||||    
T  14796998 tttttgcaattttttatgtaaattcctctgaatttcttatatacacacttataaattaggccattactttagatttttcgaatatttgcttgcaatttct 14796899  T
Q  142 tatgtacgccc-tataaatgtgttgcaa 168  Q
    ||||||  ||| ||||||||| ||||||    
T  14796898 tatgtaaacccgtataaatgtattgcaa 14796871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 14805872 - 14805745
Alignment:
Q  43 tttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttct 141  Q
    |||||||||||| || ||||||   || ||||||||||||||| |  | |||||||| ||| ||| ||||| ||||||  | ||||||||||||||||||    
T  14805872 tttttgcaattttttatgtaaattcctctgaatttcttatatacacacttataaattaggccattactttagatttttcgaatatttgcttgcaatttct 14805773  T
Q  142 tatgtacgccc-tataaatgtgttgcaa 168  Q
    ||||||  ||| ||||||||| ||||||    
T  14805772 tatgtaaacccgtataaatgtattgcaa 14805745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 44107382 - 44107521
Alignment:
Q  28 ggctccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attat 126  Q
    |||||||| |||| ||||||||   ||||| ||||||   || ||| ||| ||||||||| |||||||||||    |||||||| | ||||||| |||||    
T  44107382 ggctccggtccaatttttttgc---ttcttatgtaaattcctctgatttttttatataaacccctataaattaattaatttcttcagattttttgattat 44107478  T
Q  127 ttgcttgcaatttcttatgt-acgccctataaatgtgttgcaa 168  Q
    || ||||||||||||||||| |  || ||||||||||||||||    
T  44107479 ttacttgcaatttcttatgtaaaaccttataaatgtgttgcaa 44107521  T

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Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 45968761 - 45968685
Alignment:
Q  71 tgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgcttgcaatttcttatgta 147  Q
    ||||||| ||||||||   | |||||||||| |||||| | || |||||| ||||||| ||||||||||||||||||    
T  45968761 tgaattttttatataatctcttataaattggacaatttttatagatttttgattatttacttgcaatttcttatgta 45968685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 8430508 - 8430551
Alignment:
Q  104 aatttctttacatttt-ttattatttgcttgcaatttcttatgt 146  Q
    |||||||||| ||||| |||||||||||||||||||||||||||    
T  8430508 aatttctttaaatttttttattatttgcttgcaatttcttatgt 8430551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 54653 - 54542
Alignment:
Q  31 tccgggccaaattttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatttgc 130  Q
    |||||||||| ||||||||||||| |||||||||   |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  54653 tccgggccaatttttttgcaattttttgtgtaaattcctatgaattttttatataaatccctataaattggacaatttctttacattttttattatttgc 54554  T
Q  131 ttgcaatttctt 142  Q
    ||||||||||||    
T  54553 ttgcaatttctt 54542  T

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Target: scaffold0079; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 102 - 212
Target Start/End: Complemental strand, 54551 - 54441
Alignment:
Q  102 gcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaannnnnnnnnngctcgggctttacaatatttctg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          || ||||||||||||||||||||    
T  54551 gcaatttctttacattttttattatttgcttgcaatttcttatgtacgccctataaatgtgttgcaattttttttttgcccgggctttacaatatttctg 54452  T
Q  202 gctccgccact 212  Q
    |||||||||||    
T  54451 gctccgccact 54441  T

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Target: scaffold0045 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 42 - 147
Target Start/End: Original strand, 34457 - 34563
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt-attatttgcttgcaatttc 140  Q
    |||||||||||||||| |||||| | || ||||||  ||||||||||| ||||||||||| || |||||||| ||||||| ||||||||||| |||||||    
T  34457 ttttttgcaatttcttatgtaaatccctctgaattctttatataaatctctataaattggacagtttctttagattttttgattatttgcttacaatttc 34556  T
Q  141 ttatgta 147  Q
    |||||||    
T  34557 ttatgta 34563  T

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Target: scaffold0086 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 20836 - 20915
Alignment:
Q  42 ttttttgcaatttcttgtgtaaacctctatgaatttcttatataaatccctataaattgggcaatttctttacatttttt 121  Q
    |||||||||||||||| ||||||   || ||||||||||||||||| | ||||||||||| |||||| |||| |||||||    
T  20836 ttttttgcaatttcttatgtaaattcctctgaatttcttatataaagctctataaattggacaatttttttagatttttt 20915  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 85592 - 85547
Alignment:
Q  73 aatttcttatataaatccctataaattgggcaatttctttacattt 118  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  85592 aattttttataaaaatccctataaattggacaatttctttacattt 85547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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