View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5681_low_8 (Length: 339)
Name: NF5681_low_8
Description: NF5681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5681_low_8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 46795192 - 46795542
Alignment:
| Q |
1 |
ctccctttagaagaacaactaccatcaccgccaccaccgccggaaaatgatttgttgctatttgaatcaaaaaatgggctgtt------------gttgt |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46795192 |
ctccctttagaagaacaactaccatcaccgccaccaccgccggaaaatgatttgttgctatttgaatcaaaaaatgggctgttgtcgttgttgttgttgt |
46795291 |
T |
|
| Q |
89 |
tgtaacaagcagcgtttttagttctagctagttctttgattgcagtgtcagatttagtgaaaagccactcaagtgtgttacttggtttgtcaaactctaa |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46795292 |
tgtaacaagcagcgtttttagttctagctagttctttgattgcagtgtcagatttagtgaaaagccactcaagtgtgttacttggtttgtcaaactctaa |
46795391 |
T |
|
| Q |
189 |
catatcttgaagatcaaagaactttcttgctatttcacttgacaatcttacccttctgtctctcaaaccctgtgatgtgtgaatcttactgtgcctatct |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46795392 |
catatcttgaagatcaaagaactttcttgctatttcacttgacaatcttacccttctgtctctcaaaccctgtgatgtgtgaatcttactgtgcctatct |
46795491 |
T |
|
| Q |
289 |
ttctttcctcctataactgttgctggttgtttctgctctgtcacaacaaaa |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46795492 |
ttctttcctcctataactgttgctggttgtttctgctctgtcacaacaaaa |
46795542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 139 - 293
Target Start/End: Complemental strand, 6032191 - 6032037
Alignment:
| Q |
139 |
gatttagtgaaaagccactcaagtgtgttacttggtttgtcaaactctaacatatcttgaagatcaaagaactttcttgctatttcacttgacaatctta |
238 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| |||| |||||||||| ||||||| ||||||||||| |||||||| || || || || | || | ||| | |
|
|
| T |
6032191 |
gatttattgaagagccattcaagtgtgttgcttgctttgtcaaaccctaacatgtcttgaagatcgaagaacttcctcgcgatctcgatggaaagtctca |
6032092 |
T |
|
| Q |
239 |
cccttctgtctctcaaaccctgtgatgtgtgaatcttactgtgcctatctttctt |
293 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||| || ||||| |||||||| |
|
|
| T |
6032091 |
cccttctgtctctcaacccttgagatgtgtgaatcttgctatgcctgtctttctt |
6032037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 6711326 - 6711250
Alignment:
| Q |
138 |
agatttagtgaaaagccactcaagtgtgttacttggtttgtcaaactctaacatatcttgaagatcaaagaactttc |
214 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| || | |||||||||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
6711326 |
agattttgtgaaaagccaatcaagtgtgttgctagctttgtcaaaccctaacatgtcttgaagatcgaagaactttc |
6711250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University